« Back to Oryza punctata search


Detailed information on CNT30603857


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10QA5|D14_ORYSJ, E-value = 3e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Oryza punctataOryza sativa75.9874.694.25661forward
CNT30678417Oryza punctataSetaria viridis9.8926.0695.3586forward
CNT30522336Oryza punctataSetaria italica32.41106.4286.88282forward
CNT30639906Oryza punctataNymphaea colorata21.2612.982.16185forward
CNT3070001Oryza punctataQuercus suber21.9536.5282.72191forward
CNT30524833Oryza punctataPhaseolus vulgaris20.811.9681.22181forward
CNT30296550Oryza punctataTriticum aestivum22.4146.6589.74195forward
CNT30589303Oryza punctataMusa acuminata21.6125.6188.83188forward
CNT30553163Oryza punctataOryza glaberrima26.6716.8798.28232forward
CNT30241770Oryza punctataAvena sativa8.0523.8997.1470forward
CNT30448528Oryza punctataSaccharum spontaneum21.9512.3191.1191forward
CNT301613Oryza punctataZea mays21.9533.5191.62191forward
CNT3067156Oryza punctataLeersia perrieri20.5766.5494.41179forward
CNT30684140Oryza punctataTriticum urartu24.2531.3594.31211forward
CNT30361799Oryza punctataSorghum bicolor22.8720.8891.96199forward
CNT30596039Oryza punctataOryza meridionalis11.4938.1799100forward
CNT30369879Oryza punctataOryza glumipatula28.5134.5497.58248forward
CNT30147849Oryza punctataBrachypodium distachyon18.6236.7390.74162forward
CNT30100699Oryza punctataOryza rufipogon74.9459.2794.17652forward
CNT30575527Oryza punctataOryza barthii25.1734.7198.17219forward
CNT30579178Oryza punctataEchinochloa crusgalli23.116.4193.53201forward
CNT30116295Oryza punctataOryza nivara52.7648.7392.59459forward

Expression of CNT30603857

Peptides detected in this lncRNA

>peptide 1 (33 aa)
ATRTRGAPRWRAGRWISTGRERGGAPGRGGWGR*

>peptide 2 (40 aa)
MRTSLAKRSGRRMEARMPIMAETEWPTKAQRGMRSASRLS*

>peptide 3 (34 aa)
MSGRMLKRVRLNSCTAAGTSAPTASGAYPVAQAE*

>peptide 4 (60 aa)
MSVLPDRPPDQIQFQVATKERERIGISGIAHVPGRGADEDELGEEVGAADGGEDADHGGD*

>peptide 5 (72 aa)
LRARAARRGGVRGVGLVPGESAAEHLGEEAGGAEVGEVALGLEELDGGAAAEVGLEVRGDGGWDGDVAGGRS*

Sequence

>CNT30603857
GGCTACGCGCACGCGCGGCGCGCCGCGGTGGCGTGCGGGGCGTTGGATTAGTACCGGGCGAGAGCGCGGCGGAGCACCTGGGCGAGGAGGCTGGGGGCGC
TGAGGTGGGGGAGGTGGCCCTCGGTCTGGAGGAACTCGACGGTGGTGCGGCCGCCGAGGTGGGCCTTGAGGTACGCGGCGACGGAGGCTGGGACGGAGAC
GTCGCGGGTGGTCGGTCTTGAACACGGTCTGGCAGACGTGGAGGGAGATGTCCGGGCGCATGTTGAAGAGGGTGCGGCTGAACTCCTGCACCGCCGCCGG
CACGTCGGCACCCACCGCCAGCGGCGCGTACCCCGTCGCCCAAGCCGAGTAGTTCGCCCCCATCGCGTCGAACACCTGCTGTATCTCCTCCAGCTCGAAC
CCGCCGTGGTAGTCGCTGTCGTTCAAGAACCTGCACACACACATGTCCGTGCTCCCCGATCGCCCCCCCGATCAGATTCAATTTCAAGTCGCAACGAAAG
AGAGAGAAAGGATTGGAATCAGTGGAATCGCGCACGTACCGGGGAGAGGCGCCGATGAGGACGAGCTTGGCGAAGAGGTCGGGGCGGCGGATGGAGGCGA
GGATGCCGATCATGGCGGAGACTGAGTGGCCGACGAAGGCGCAGCGCGGGATGCGGAGCGCGTCGAGGTTGTCATAGCGGCGGAAGTCGAAGTGGTCCGG
GTTGACGCTGCCGGCGCAGACGAGGTCGTAGAGCACGACGCGGTGGTCGCGGGTTAGGTACGGCAGGACGCGGCTCCACGCCGACTGGTCCGTCCCGAAG
CCATGCGACAGCACCACCACCCGCTCGCCGCTGCCCACCACCCGCACGTTCAGGATCTGCAGCAGCTTCG