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Detailed information on CNT30603852


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002200, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697923Oryza punctataOryza sativa5647.2791.11709forward
CNT30552893Oryza punctataOryza glaberrima5626.9989709forward
CNT30109864Oryza punctataOryza longistaminata56.083791.55710forward
CNT30100516Oryza punctataOryza rufipogon55.7731.6989.24706forward
CNT30577378Oryza punctataOryza barthii56.2430.1487.22712forward
CNT30117596Oryza punctataOryza nivara24.5745.0194.53311forward

Expression of CNT30603852

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MCVPTTDPRIGTDKHRRFPISKIGGRHVPKHIYPLA*

>peptide 2 (39 aa)
MSRIRTTLSRQVITPPLSMLIPIEHQDMYYTWLNSKFLN*

>peptide 3 (42 aa)
MIEVRFRSRSRSPVDCLWHVNRALVLFCLLLLFSDSCWSAWP*

>peptide 4 (30 aa)
MIFVNSALHKVTIATPCVTLYITAFCVVAC*

>peptide 5 (30 aa)
WNPLSSKSSISSPSISVSIRREATCAASKR*

Sequence

>CNT30603852
TTGGAATCCATTATCAAGCAAGAGTAGTATAAGCAGCCCTAGTATTAGTGTATCGATTCGTCGTGAGGCAACGTGTGCAGCTTCCAAGAGGTGAAGGTTG
ATCAAGATTATGTCAAGAATAAGGACTACCTTGAGTAGGCAAGTCATCACCCCTCCCTTGAGCATGTTGATCCCAATTGAGCACCAGGACATGTATTACA
CTTGGCTAAACTCTAAATTCTTAAATTGATGGGTTGGGATCATGCATATTGTTTTGAACTGGTGATCAACTTCTCGAGAGGCGAGAAGGGATAGACCCCA
GAAAATCATGACGAGACAGCGGCAGGAAGCCATCCTGATATAACCTTGGATGGTAGACAGAACCTCTGCTGGTTAAGCAATTGTGGAACTAAAATTTGAT
CAGTCAATGCTAAGTCTTAGGTTTGTGAAATGATATTTGTGAACTCAGCTTTACACAAAGTAACCATAGCCACTCCTTGTGTTACCCTGTACATTACTGC
ATTTTGTGTGGTGGCTTGTTGAGTACTTTTGTACTCATTGTTGCTCTATTATATCTTTTAGCAGAGTGCTTGAATAGAAGCCCTTGTTAGTACGCTTGCG
TACGTAACAAGATGATCGAAGTGCGATTCCGTTCTAGGTCTCGTTCCCCAGTCGACTGCTTGTGGCATGTCAACCGGGCCCTTGTATTATTTTGTCTTCT
GTTGTTGTTCTCTGATAGTTGTTGGTCTGCCTGGCCCTAATGTAAGCATATAACTCTTTAGCCTGAATTCATTCGTGATATGTTGTGATTCGGCTATGTA
TGTGTGTACCAACTACTGATCCAAGGATTGGTACTGATAAACACAGAAGATTTCCGATTTCCAAAATCGGGGGTCGACATGTACCCAAGCATATATACCC
ACTTGCATAGATGAAAAGTCATTTCTGTTCTTTTTCGCCTAACTCTATTTCGACAATTTGAGCAGGGACAAACAACTCCAAACTTATCAGCATTTGGGAC
ACCTTCAAAAGCATGATCTAAAAACATATTTGTGTTGTGCACCCAATCATCAGAGTGGCATCCATTGTCATGCCACCCACCATACATCCAACTCCGATCT
TCTACTAACAGGAAAACATGATGTAATGTTTCCTACTGTTTGGGTTAAAAAAAGATAAATTGCTACACAACATTAGCATGAACAAATGAACTTAGTGTTA
CCAAAATTGAACTTCTGAAGAAACAATTATTTATATAGTATCAGGGCCAAAGAGTAATGGAGAAAG