CANTATAdb - search

Detailed information on CNT30603841

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003370, E-value = 2e-169

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691965	Oryza punctata	Oryza sativa	80.16	77.5	94.7	396	forward
CNT30595887	Oryza punctata	Oryza meridionalis	80.16	92.52	94.7	396	forward

Expression of CNT30603841

Peptides detected in this lncRNA

>peptide 1 (91 aa)
KLRASTHPKFQTRLQVLFVYASPVVKCRKMTNHGATSAVPCRDGHGSAASRRHMPRRGQIKARIVSAAVHSVASVLLKAIHSSHILVRNPF*

>peptide 2 (43 aa)
MVQKVVSLDGCTFLSPHCVPSCLYTSSVINHSLVKFKQALATPT

>peptide 3 (31 aa)
MAPPPLFRAEMVTDQQQAGDTCPGVGRSRRG*

Sequence

>CNT30603841
AAAAGCTGAGAGCGAGCACGCATCCAAAGTTCCAAACTAGACTGCAGGTGCTGTTTGTGTACGCATCTCCAGTAGTGAAGTGCAGGAAGATGACCAACCA
TGGCGCCACCTCCGCTGTTCCGTGCAGAGATGGTCACGGATCAGCAGCAAGCAGGAGACACATGCCCAGGCGTGGGCAGATCAAGGCGAGGATAGTGTCG
GCTGCTGTGCACTCCGTCGCCTCGGTGCTCTTGAAAGCGATCCACAGCAGCCACATCCTGGTCAGAAATCCCTTCTAATGGATCTATCAGCTAGTATACC
GAAATTAGGCGAGTTACCTGTTCGGCTGTACCTGGAATCAGCTGTTTTTCAAGTGTAAGCATGGTTCAGAAAGTGGTTAGCCTAGATGGATGTACATTTC
TTTCTCCCCATTGTGTCCCTTCTTGTTTGTACACAAGTTCTGTAATCAATCATAGTTTGGTTAAGTTTAAGCAAGCTCTTGCTACTCCGACCTG