Detailed information on CNT30603768


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691572Oryza punctataOryza sativa52.2636.1896.85127forward
CNT30520175Oryza punctataSetaria italica54.731084.21133forward
CNT30552831Oryza punctataOryza glaberrima68.3131.6895.18166forward
CNT30461926Oryza punctataSaccharum spontaneum57.6128.9984.29140forward
CNT30364230Oryza punctataSorghum bicolor55.1428.5785.07134forward
CNT30575136Oryza punctataOryza barthii68.315.9895.18166forward
CNT30498199Oryza punctataDigitaria exilis35.3915.1186.0586forward
CNT30115947Oryza punctataOryza nivara68.3132.4994.58166forward

Expression of CNT30603768

Peptides detected in this lncRNA

>peptide 1 (79 aa)
VRVLVGVPVGFPEPLDEAGEVVLRVQLQLVVVAAADHLPDQRLLLVGDGGGGQRRGEEEEAEEEEAVIHGGEFGALLVWN

>peptide 2 (80 aa)
GTRARRRPGRISRTSGRSWRSGAPRSAPARCRRRRRPLAGSAAPPRRRRRRRPAPGRGGGGRGGGGGDPWWGIWCFACLEL

Sequence

>CNT30603768
GGTACGCGTGCTCGTCGGCGTCCCGGTAGGATTTCCCGAACCTCTGGACGAAGCTGGCGAAGTGGTGCTCCGCGTTCAGCTCCAGCTCGTTGTCGTCGCC
GCCGCCGACCACTTGCCGGATCAGCGGCTCCTCCTCGTCGGAGACGGAGGCGGCGGCCAGCGCCGGGGAGAGGAGGAGGAGGCCGAGGAGGAGGAGGCGG
TGATCCATGGTGGGGAATTTGGTGCTTTGCTTGTTTGGAATTG