Detailed information on CNT30603733


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003123, E-value = 5e-102

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691393Oryza punctataOryza sativa68.4998.3792.01363forward
CNT30225098Oryza punctataHordeum vulgare16.2330.9488.3786forward
CNT30460356Oryza punctataSaccharum spontaneum24.5327.1486.92130forward
CNT3066989Oryza punctataLeersia perrieri27.1714.0194.44144forward
CNT30106373Oryza punctataOryza longistaminata92.0841.6490.57488forward
CNT30584129Oryza punctataEchinochloa crusgalli25.4731.5486.67135forward
CNT30556342Oryza punctataPanicum hallii23.47.8887.9124forward

Expression of CNT30603733

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MNVVLAATTAAPASWISCAVLLDAAPRQPCRKFWVLTRRGSEV*

>peptide 2 (62 aa)
LICIPSSLFSPLLLLTLVYFLAFILAFCLLPHLASLFLRLLGDGSPIGSGDEHRRLPGQDHG*

>peptide 3 (41 aa)
MDPPSAQVMSTDDFQDKTMDECCSCCYDCCSSILDFLCCSS*

>peptide 4 (34 aa)
MLFLLLRLLLQHPGFPVLFFLMPPLVNLAENSGC*

Sequence

>CNT30603733
CACTTATCTGCATTCCATCCAGCCTATTTAGCCCTTTGCTATTGCTTACTCTAGTGTACTTCCTAGCCTTTATACTAGCCTTCTGCCTTCTTCCTCACCT
CGCATCTCTTTTTCTTCGACTTCTTGGCGATGGATCCCCCATCGGCTCAGGTGATGAGCACCGACGACTTCCAGGACAAGACCATGGATGAATGTTGTTC
TTGCTGCTACGACTGCTGCTCCAGCATCCTGGATTTCCTGTGCTGTTCTTCTTGATGCCGCCCCTCGTCAACCTTGCAGAAAATTCTGGGTGCTGACGAG
GAGAGGATCGGAAGTTTAGATGATATATATTGGGCTGTACAAGTTATTGAATTCTTGGATTAATTCTTCCTCCCTTGCGTTGTAACTGCGATTTGTGCGC
CACTTTATGAATGATTTTGGGAGGAAATTTGTGAATTATCAAGTTCTGAAACATCCATTTGTCTTCCAGCTTTTTGCGGTATGAAAATCTCTTGAGTTTA
GTTTCCCTGGTGATAGTTGATACTTCGTGC