« Back to Oryza punctata search


Detailed information on CNT30603728


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-151

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-104

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30488054Oryza punctataOlea europaea61.1377.0783.84662forward
CNT30588982Oryza punctataMusa acuminata57.5372.6185.39623forward
CNT30364822Oryza punctataSorghum bicolor60.5777.0987.96656forward
CNT30120117Oryza punctataCitrus clementina54.0286.1683.93585forward

Expression of CNT30603728

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MSLCWSGGMPSLSWIFALTLSMVSELSTSRVMVLPVRVFTKICIPPRRRRTK*

>peptide 2 (76 aa)
FRIRDVKRTPKLLLGMQTILFQNRKPRPEMLECNQFTVHKPGKEVTPPSWASKVTQNHKTTNQAGMICLITDPRTS*

>peptide 3 (42 aa)
MSLCWSGGIPSLSWILALTLSMVSELSTSRVIVLPVKVLTKIC

Sequence

>CNT30603728
CTTTAGAATAAGAGACGTAAAAAGGACTCCAAAGTTACTATTAGGTATGCAGACTATCCTTTTTCAGAATAGAAAACCCAGACCAGAGATGCTGGAATGT
AACCAGTTTACAGTTCACAAGCCCGGAAAAGAAGTAACGCCACCTTCTTGGGCATCGAAAGTAACACAAAACCACAAAACCACAAATCAAGCTGGAATGA
TCTGTTTGATCACGGATCCACGGACCAGTTAAGAATAACGAGCATAAAAGCAGACTAGTTATAGAAGAAACCAGTACTATATAGGAATAACATAAGTTCA
TGATGGAACATTGAACGATACGAGGCGCAACAACACAGCGGGTGTGCCATCACGCGTCGGCATTGCATTCAAATACGCATCAAACTGTTTAGTCAAGACG
ACCACCGCGGAGGCGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCTGCCAAGGTACGCCCATCCTCTAGCTGCTTCCCAGCAAAGATG
AGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCGATGGTGTCAGAGCTCTCCACTTCCAGAGTTATGGTCTTGC
CAGTCAGAGTCTTCACAAAGATCTGCATCCCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGTCC
ATCCTCTAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATTGTATCAGAG
CTCTCAACCTCAACTGTGATCGTCTTTCCTGTAAGGGTCTTCACAAAGATCTGCATCCCACCCCTCAAGCGAAGAACAAGGTGGAGGGTGGATTCCTTTT
GAATGTTATAGTCAGCGAGTGTCCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTT
GGCTTTAACATTGTCAATGGTGTCGGAACTCTCTACATCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCA