Detailed information on CNT30603724


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-151

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-90

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30406246Oryza punctataBeta vulgaris61.3198.9683.28664forward
CNT30595409Oryza punctataEragrostis curvula62.5174.5687.44677forward

Expression of CNT30603724

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MKGRLLLNVVIGQCAPILQLLPSKDEPLLVRWDTLLVLDLGLDIVNCIRALNLNCDRLSCKGLHKDLHPTPQAKNKVEGGFLLNVIVSECPAIL*

>peptide 2 (52 aa)
MSLCWSGGMPSLSWILALTLSMVSELSTSSVIVFPVRVLTKICIPPRRRRTK*

>peptide 3 (42 aa)
MSLCWSGGIPSLSWILALTLSMVSELSTSRVIVLPVKVLTKIC

>peptide 4 (76 aa)
FRIRDVKRTPKLLLGMQTILFQNRKPRPEMLECNQFTVHKPGKEVTPPSWASKVTQNHKTTNQAGMICLITDPRTS*

>peptide 5 (58 aa)
MSLCWSGGIPSLSWILALTLSIVSELSTSTVIVFPVRVFTKICIPPLKRRTRWRVDSF*

Sequence

>CNT30603724
CTTTAGAATAAGAGACGTAAAAAGGACTCCAAAGTTACTATTAGGTATGCAGACTATCCTTTTTCAGAATAGAAAACCCAGACCAGAGATGCTGGAATGT
AACCAGTTTACAGTTCACAAGCCCGGAAAAGAAGTAACGCCACCTTCTTGGGCATCGAAAGTAACACAAAACCACAAAACCACAAATCAAGCTGGAATGA
TCTGTTTGATCACGGATCCACGGACCAGTTAAGAATAACGAGCATAAAAGCAGACTAGTTATAGAAGAAACCAGTACTATATAGGAATAACATAAGTTCA
TGATGGAACATTGAACGATACGAGGCGCAACAACACAGCGGGTGTGCCATCACGCGTCGGCATTGCATTCAAATACGCATCAAACTGTTTAGTCAAGACG
ACCACCGCGGAGGCGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCTGCCAAGGTACGCCCATCCTCTAGCTGCTTCCCAGCAAAGATG
AGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTCTCGACTTCAAGTGTGATAGTCTTTC
CAGTTAGGGTCTTGACAAAGATCTGCATCCCTCCACGAAGACGGAGGACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCCAATGTGCGCCC
ATCCTCCAGTTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATTGTATCAGAG
CTCTCAACCTCAACTGTGATCGTCTTTCCTGTAAGGGTCTTCACAAAGATCTGCATCCCACCCCTCAAGCGAAGAACAAGGTGGAGGGTGGATTCCTTTT
GAATGTTATAGTCAGCGAGTGTCCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTT
GGCTTTAACATTGTCAATGGTGTCGGAACTCTCTACATCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCA