CANTATAdb - search

Detailed information on CNT30603706

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30364526	Oryza punctata	Sorghum bicolor	8.51	28.29	82.95	129	forward
CNT30369498	Oryza punctata	Oryza glumipatula	35.45	33.58	89.2	537	forward
CNT30100338	Oryza punctata	Oryza rufipogon	35.45	57.01	89.57	537	forward
CNT30115938	Oryza punctata	Oryza nivara	37.29	44.45	89.73	565	forward

Expression of CNT30603706

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MRRGACTAHGSGEDGGEGGRQGSSPMRRRQRRPRVASASARRMKAGKGRELGSGEAEEKAGPA*

>peptide 2 (31 aa)
QSNSLLMTTYKEYKSTAKQHEKKKKTKLNYH*

>peptide 3 (29 aa)
MLTKPQINPHYQRIIHLTKPLLLLPLLLY*

Sequence

>CNT30603706
ATCAAAGCAATAGTCTACTTATGACTACTTACAAAGAATACAAATCCACAGCTAAACAGCATGAGAAAAAAAAGAAAACCAAACTAAACTACCACTGATG
TATTTCACTACTACGAGGAACTGATACATATATTTGATTTGAGTACCCGATAAGATATATCTCACAGACGAACATAACACCTAATATGACTTAATTACTG
ATGAGAACTTTGTCTTACATTTGACACTGGACATAAATACATAATACCTAACACGCCTTAATGAAAACTATTAGTTCTACTATTCTTCACCTGACATGAA
CTCATGCTCACCAAACCACAAATCAACCCCCACTACCAACGAATTATTCATCTAACCAAACCTCTACTATTATTACCACTACTGCTGTACTAACAGATCA
GCAACACCAGCCAGCCTAATTTCCCACCAAACTAACCCAATTTCCCAACCAAGACACCACCTAAAAACCAAACTCAAGACAAGACTAATCAACCTAGTGT
TCTACGCGCGCAAAGAGCGACGTAGAAGCAAACCCAACATAATTCCACCAAGAAACTTTTGAAACCTAACCACCACCAAATCCAACCACCGGCAGATGCG
TTCCACCAAACTCGTCCTCTGAAAAAATACCGGGAGAGTTTGATCGGAACGCCGCCGGGATCTGATCCGGACAAGCTTTCGATCGGATCGAAACCACCAA
GCAATCCATCCATCGGAGAAGAGAAGACGGGAGTAGATGAGGAGAGGAGCGTGCACGGCTCACGGCTCCGGCGAAGACGGCGGTGAGGGAGGCCGTCAAG
GGAGCTCGCCGATGCGGAGGAGGCAGCGGAGGCCGCGGGTCGCCTCGGCCTCGGCGCGGCGGATGAAGGCGGGGAAGGGGAGGGAGCTCGGCTCCGGCGA
GGCTGAGGAGAAGGCCGGGCCGGCGTAGCCTGGCGCGTCGGCGACGGACTTGATCTTCCTCGGCACAGCGGCCGGCTGCTGCTGCTTCGATCTGGTGGGG
CGAGGCGCCTTCTGGTCAGTCGGCGCGGCTTGCGCCGCAACCGGAGCAGGCGACGGCGAGGGAACCGGTGGCTCCTCGCCGCGCTTGAGGATCCGGATCT
CCTCCATCACAAGCCTCTGCTTGGGAAACTCCTTCGTCGGCGACCCTTGCTTCCTCGCCACCGGCCTCGCCGGCGGTGAGCGACGTCCCTGAGGCGCCGC
CGCCGCCTTGGGGGGCGGTGACGTCACCCTCGGCGCCGTCTTAACCACCGGCGGCGAGCTCACCGCCGCCATCTTCGGGGGCGGTGAGGCCGGCTTGGTG
TGCCGCCTCCGCCTCGGCTTCGAAGCCGGAGACACGCCGAAGGCCTCCAGATGCATCCGGTTGTCGAGGACGTCATGGGATCTGAGCACCGCAGCCGTCG
CCATGGACGAACGAACGCCAGAGGTTGACTCGAGAATTTGAGAAGTGGAAGAGAAGAGAGAGAGACCTAACCCTAACGAGAGAGGGGAATAGATTTGGTT
TGGGATTTAGAGGGG