Detailed information on CNT30603683


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691405Oryza punctataOryza sativa41.1517.7985.47179forward
CNT30552618Oryza punctataOryza glaberrima85.7576.7595.71373forward
CNT30460927Oryza punctataSaccharum spontaneum6028.3481.23261forward
CNT3066951Oryza punctataLeersia perrieri65.757.0179.72286forward
CNT30722486Oryza punctataTriticum spelta57.2451.4585.94249forward
CNT30109886Oryza punctataOryza longistaminata15.6328.6988.2468forward
CNT30150273Oryza punctataBrachypodium distachyon31.7260.7982.61138forward
CNT30575248Oryza punctataOryza barthii31.7244.6682.61138forward

Expression of CNT30603683

Peptides detected in this lncRNA

>peptide 1 (98 aa)
AHPCRIAHVLLPKLESSPSAPETASGGGVMVPLPSSSTEIAGQPRLSLASILSKQETTSFIVGLMKGLQLTHLQAVSSTFSICSSYPVPRSIGSRTSI*

>peptide 2 (45 aa)
LTRAELHTCCSQNWSHLPQLRRRRAAAASWSLSRAAVRRSPDNRG*

>peptide 3 (77 aa)
CSPVQNCTRVAPKIGVISLSSGDGERRRRHGPSPEQQYGDRRTTEAKFGVYTVQAGDYFLYSRPHERITVDTLASSF*

Sequence

>CNT30603683
TGCTCACCCGTGCAGAATTGCACACGTGTTGCTCCCAAAATTGGAGTCATCTCCCTCAGCTCCGGAGACGGCGAGCGGCGGCGGCGTCATGGTCCCTCTC
CCGAGCAGCAGTACGGAGATCGCCGGACAACCGAGGCTAAGTTTGGCGTCTATACTGTCCAAGCAGGAGACTACTTCCTTTATAGTCGGCCTCATGAAAG
GATTACAGTTGACACACTTGCAAGCAGTTTCTAGCACCTTCAGCATTTGCTCATCATATCCTGTGCCTCGCAGTATTGGATCCAGGACCTCAATCTGATT
CCCTTCTGATTTCATCTCCTGTACCCACTTGACAAGTTCTTTGGATGAAGACAAGATATGGACAGGTCGTCTTCCTGTGAGCAGTTCAAGCAGGACAACT
CCAAAGCTGTAAATATCGCCTTTCAAAGTAGCAAC