Detailed information on CNT30603681


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691495Oryza punctataOryza sativa42.7729.7489.05612forward
CNT30552873Oryza punctataOryza glaberrima42.6341.389.51610forward
CNT30595715Oryza punctataOryza meridionalis40.7441.0989.54583forward
CNT30369691Oryza punctataOryza glumipatula41.0243.8789.61587forward
CNT30575108Oryza punctataOryza barthii42.6336.3389.67610forward

Expression of CNT30603681

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLGSWLDPWLLCFVGLQEFLQECPVSDPVIFGVDCSSE*

>peptide 2 (46 aa)
MPSPHSTVRACGAPWFLRVMQGDGDKLVVATAHLARKSLGFFRPYR*

>peptide 3 (36 aa)
MVRLNLLINNNIFTSVDASATRQCQMNSSTYEVLVR*

>peptide 4 (92 aa)
SDTSSPSPPPPRATCVAALLRFHGHMPRTARHGHRLLARALSLARARAVLPPRPPPRSASPPFEPLSLSLSLSLSCARRDGRSRTDLVNSPP*

>peptide 5 (63 aa)
LRHFFAFPSSAASDMCRGFASLPRPHAAHGAPRAPPTRSRSLSRARARRPPAASAAQIRLSPF*

>peptide 6 (88 aa)
AQTLLRLPLLRRERHVSRLCFASTATCRARRATGTAYSLALSLSRARAPSSRRVRRPDPPLPLLNLSLSLSLSLSPVRGATGAAAPIS*

Sequence

>CNT30603681
GCTCAGACACTTCTTCGCCTTCCCCTCCTCCGCCGCGAGCGACATGTGTCGCGGCTTTGCTTCGCTTCCACGGCCACATGCCGCGCACGGCGCGCCACGG
GCACCGCCTACTCGCTCGCGCTCTCTCTCTCGCGCGCGCGCGCGCCGTCCTCCCGCCGCGTCCGCCGCCCAGATCCGCCTCTCCCCCTTTTGAACCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCCTGTGCGAGGCGCGACGGGCGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACACTCTCCCAGTCCCCCGC
CCAAATCGCAATGCCTTCTCCGCACTCGACGGTCCGGGCGTGCGGCGCGCCGTGGTTTCTCAGAGTTATGCAAGGGGATGGTGACAAGCTTGTGGTAGCA
ACTGCACATCTTGCCAGAAAATCTTTAGGGTTTTTCAGACCATACCGGTGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTT
GCCAAAACTATCAAGTGAGAAAGCAGAGTAGAGTTATTCAATTTACGGACACACCAGAAAAAATTAAAGTAATAAACATGTCTGACCAACAAACACGATG
ATTAATAACAGAACTATTGTGGCATGAGATTAATATATTGAAGCATTATGCTTACAACAGTTATAAAATGAAAACTAAATGTAGGCAGGTACATGTTTTG
ACAATGTTGACGTTATCTTAATGGTTCGGCTAAATCTTTTGATTAACAACAATATATTTACTTCCGTGGATGCTAGTGCCACCAGGCAATGTCAAATGAA
CTCATCAACATATGAAGTACTAGTAAGGTGAGTAAAGTCTGGTAAGGAAGTCGAACGGCTAATATGTATGTAAATTATTCCTAGAGTTCTTAGGCTGCAC
TGGTAAACTGTTTAGTCCATCCTGATCATCTATTGCTGTCAACTCTGATCAGATTACGTCGTCTCCACATTGTGTATTGGCTTCCACTGCTGAATATTTC
TTTTATTGCCCATGACATGCTTGCTTGGAAGGGCAGTTTTGAGTTGATCATGAGGCCAGTCACAATTCTTAGCACTGAACTGTGAATTTCTAAATGCACT
ATGTTAGGTTCATGGCTTGATCCTTGGTTACTTTGTTTTGTAGGTTTGCAGGAATTTCTCCAGGAATGCCCAGTGAGTGATCCTGTAATTTTTGGAGTTG
ATTGTTCATCAGAATAGCACTACAATTTTCCTGTCATCTGTGCTTTGGTAGCGGAACGTCCTTTGTCCGATGCTACTCAACAGGAGTGGCAAAGACACAT
CTTTGTACTTGTGTAAATCAAATAAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTTCTCAAGCAAATGAAACATTCCAGCT
TTTGTGAAGTTAAGTTTTGCTGTTAACATGC