CANTATAdb - search

Detailed information on CNT30603678

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LFS4|NIK1_ARATH, E-value = 7e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30556133	Oryza punctata	Oryza glaberrima	29.03	60.08	85.71	301	forward
CNT30595843	Oryza punctata	Oryza meridionalis	11.19	33.33	82.76	116	forward
CNT30110592	Oryza punctata	Oryza longistaminata	23.24	60.71	82.99	241	forward
CNT30150279	Oryza punctata	Brachypodium distachyon	9.74	24.82	82.18	101	forward

Expression of CNT30603678

Peptides detected in this lncRNA

>peptide 1 (49 aa)
LLAKEMYSNNVTLKRASGRGPMMLLTSALSILRAEHLPISGGILPLNWL*

>peptide 2 (30 aa)
MTWQCHRLVIAHRGTGGESSSPDRRTPWQM*

>peptide 3 (37 aa)
MGCHLHHLSHDQSLELNVAAALRKNLTILTFDMEMKT*

>peptide 4 (43 aa)
MQRIANCCRKKTVPVEAVEADIKDDDPARGHQLHRKATGERVV*

>peptide 5 (44 aa)
MADVSMESNSRRAAARPEKGMVSLHLHGKWGVICIISRMINPWS*

Sequence

>CNT30603678
TTGTTAGCAAAAGAGATGTACTCCAATAATGTGACATTGAAGAGAGCATCTGGGAGAGGTCCAATGATGTTGTTGACGTCGGCCTTGAGCATTCTAAGGG
CAGAGCATTTACCTATTTCAGGGGGGATATTGCCGCTGAACTGGTTGTAGCTGAGATCAAGAAATGCAAAGGATCGCGAACTGTTGCAGAAAGAAGACGG
TCCCCGTTGAGGCTGTTGAAGCTGACATCAAGGACGACGATCCTGCCAGAGGACATCAGCTCCACAGGAAGGCCACCGGAGAGAGAGTTGTATGACAGGT
TTAGGTGCAACAAACGGGTGAGCTCTCCCAGGGTCGGTGAGATCTGCCCTTTAAGGCCTTTAGAGGCAAGAGAGACCTCAACGACCTCTCCATCTTCACT
GCATGTGATGCCTTCCCAAGTGCAGCAATCCATGCCATTCTTCCATGACATGGCAATGCCACCGTCTTGTGATAGCCCATAGAGGAACTGGAGGAGAGAG
CTCTTCTCCTGATCGGCGCACGCCATGGCAGATGTGAGCATGGAGAGCAACAGCAGAAGAGCAGCAGCGAGGCCAGAGAAAGGCATGGTCAGCCTGCATC
TGCACGGAAAATGGGGTGTCATCTGCATCATCTCTCGCATGATCAATCCTTGGAGTTGAATGTGGCAGCTGCTCTTCGCAAAAATCTCACGATATTGACT
TTTGACATGGAAATGAAGACTTGAGCTGATCAGCTGATGCCTGATTGTGCAGTGCCTTGGCAGAACGGCGGAGGAACTGATTTCTGGTGCAGCATTTGGT
GATGGCCTGGGCCATGCTGACATGTGTACTCTGCTCCAAAATAGAATCTAAGGGCCGTTCTATTCAGATGAGATAGATGATCAATGATTTTGAGTTTATG
ATACTCCAATTATCGGAGGGCACATAAAAATGAATTATTAGTAATTATAAAGTTGAAAAGGTTATTTTAAATGAAATTGTAAAATATCCTGATAAAGAAA
GTTATTAGAGAAATTATAACGTGTCTTTGAACCGGAG