Detailed information on CNT30603650


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554094Oryza punctataOryza glaberrima40.1342.7989.5181forward
CNT30108882Oryza punctataOryza longistaminata35.9231.2188.27162forward
CNT30100946Oryza punctataOryza rufipogon35.9219.488.27162forward
CNT30575679Oryza punctataOryza barthii35.9228.8888.27162forward
CNT30116236Oryza punctataOryza nivara35.9218.8888.27162forward

Expression of CNT30603650

Peptides detected in this lncRNA

>peptide 1 (57 aa)
KKPSRTGGDEQRTGESGGGGAGAIGNRRRDGDAALSPPPTVPSAGHLLTEMRNTAAG*

>peptide 2 (67 aa)
EETLAHRRRRATHRGKRRRRRGRYWESTARRRRGALPSADCPLRWPPSHRDEEHCGWVTEALGGISA*

>peptide 3 (39 aa)
MSFRVLTLCYNLNIFFSNFTLFLLQPSFKFHHLPMRDAR*

>peptide 4 (51 aa)
GRNPRAQEETSNAQGKAAAAARALLGIDGATATRRSPLRRLSPPLATFSPR*

>peptide 5 (38 aa)
MLQSEHFFFKFHFIFATTILQISSSSNARCKMITGLHKN

Sequence

>CNT30603650
GGAAGAAACCCTCGCGCACAGGAGGAGACGAGCAACGCACAGGGGAAAGCGGCGGCGGCGGCGCGGGCGCTATTGGGAATCGACGGCGCGACGGCGACGC
GGCGCTCTCCCCTCCGCCGACTGTCCCCTCCGCTGGCCACCTTCTCACCGAGATGAGGAACACTGCGGCTGGGTGACTGAAGCTCTTGGTGGCATTAGTG
CTTAGCTTAAACACTTGCATTTATTTTGTAGTTCAGTTCTTAGCTGGTTACTTCTATTTATTCTAAAAAACCAATTGAATTGTAACCATTGAGTACTCTG
TGACCCTTTCATGTCTTTCCGAGTCCTGACATTATGTTACAATCTGAACATTTTTTTTTCAAATTTCACTTTATTTTTGCTACAACCATCCTTCAAATTT
CATCATCTTCCAATGCGAGATGCAAGATGATTACGGGGCTGCATAAGAATG