Detailed information on CNT30603626


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691571Oryza punctataOryza sativa30.4630.5989.43766forward
CNT30184327Oryza punctataSecale cereale5.0960.0987.5128forward
CNT30398990Oryza punctataTriticum turgidum4.9328.9787.1124forward
CNT30552492Oryza punctataOryza glaberrima30.735.7288.47772forward
CNT30459409Oryza punctataSaccharum spontaneum5.5739.5590.71140forward
CNT30716144Oryza punctataMalus domestica golden2.5821.3886.1565forward
CNT30595788Oryza punctataOryza meridionalis23.147.9892.25581forward
CNT30369516Oryza punctataOryza glumipatula30.731.1388.34772forward
CNT30100164Oryza punctataOryza rufipogon14.6754.6789.7369forward
CNT30575434Oryza punctataOryza barthii30.725.0288.47772forward
CNT30115919Oryza punctataOryza nivara7.2478.1190.11182reverse complement

Expression of CNT30603626

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MLDTQDKFSMCWVMFFEFVVAIRLTVTRCSEYGAISWFLDQCNQRSPYRGKRMCMDCPSFANLRMACPDALKCGSVWFMKT*

>peptide 2 (36 aa)
MNIIPLAPAKFLCIDDLYLEVHIFYFYHCFSSLLVN*

>peptide 3 (36 aa)
MRGLQLLPTSSSSEASELSDCVHLFSSEGSSLEFSS*

>peptide 4 (41 aa)
MTADHFVGINLSIDIGVLMYNSIFNQEFVFNHFVNTIVIPW*

>peptide 5 (36 aa)
SLPPLLPFAKSQLPLRHFPAFSYPPLGVLETSIRSF*

>peptide 6 (33 aa)
MMLPQKRGEEKDLWGGMPMYYSSLRPCRCGCLF*

>peptide 7 (30 aa)
MLVLTFSLTYRKNKHEINGDMEMKFIKEYV*

>peptide 8 (35 aa)
MITCGFLASCAVAASSLLPPSAKSISKNRKSCQFL*

>peptide 9 (33 aa)
MAETRGGFELLHVVAPSMRQQLHYLRERHKIIR*

>peptide 10 (44 aa)
FPPSSPPLRQKPTSTAPFSCLFLSPTWSSGNIDSILLDPSPPPF*

>peptide 11 (46 aa)
MYPSCCGFCCFIAILLTLLASVIQKIILLTVFRFPLFLTSKLPHNA*

>peptide 12 (82 aa)
VPSLLSSPSPKANFHCAIFLPFPIPHLEFWKHRFDPSRPFSAPVLKAPASHPKLQRSQSPTLAAPWLKPAADSSYCMWWHQA*

>peptide 13 (59 aa)
MGWFYRSVYCLLSLVVVLSALGTTRISFIYGIWKKKIGKKLNSKVCVYVYSKQCICNSVI

Sequence

>CNT30603626
GTTCCCTCCCTCCTCTCCTCCCCTTCGCCAAAAGCCAACTTCCACTGCGCCATTTTCCTGCCTTTTCCTATCCCCCACTTGGAGTTCTGGAAACATCGAT
TCGATCCTTCTAGACCCTTCTCCGCCCCCGTTTTAAAGGCGCCGGCCTCCCACCCGAAGCTTCAGCGGTCGCAGTCGCCCACCCTTGCCGCACCATGGCT
GAAACCCGCGGCGGATTCGAGCTATTGCATGTGGTGGCACCAAGCATGAGGCAACAACTGCATTACTTGCGAGAAAGGCACAAAATCATTAGATGATTAC
TTGTGGCTTTCTTGCAAGTTGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCTCTGCCAAATCTATCAGCAAAAACAGAAAATCATGTCAGTTTCTTTGA
ACTATATGCATATGATTAATCTAGAAGTTGTTGCCAAAAATCAGTCACAACTCAATATCATATGCATTTGAGATGAGGTAAAATGCTATCTAGTTCACAT
AATTCCAATATCTCTAGATATGGGATGTGCGTAGCACAAGTGCATCACAGAGTGTTATAGTTCGGTCTTCACTGCTTATTATTCTAGAGTAATTTGGGCA
AACTTGTTAATTCAGCTGGCACTTGTTTTTGTTTAGTATTCTAGTAGCTTGGTTGTTTGATCATCATTAGACTTTTTAACCTTTGGTCCTAATAGAAAAA
TTTGCACACTGAACTTTCTTGTGTTCTAAGGGGAAAAAAAACCCTGCTCTGATCTGTGTTATGGACTGGACATTGGAGTACATAATGCATGACTGCTGAT
CACTTTGTTGGTATAAACTTAAGTATTGACATAGGAGTACTTATGTACAATTCTATCTTCAATCAGGAGTTTGTTTTCAATCATTTTGTTAATACAATAG
TTATACCGTGGTAACGATGGATACAGTCTCCACTGTAAAGTCAAGGTAAATCAGATTTATCCCTTTTTGGTGTTTGGTATCTTGTTTGTATTTTTCATGA
GCGGTGGCATTTTTGAAGTATGATGTTGCCCCAAAAAAGAGGGGAAGAGAAGGATCTCTGGGGGGGCATGCCCATGTACTACAGTTCTCTGAGACCATGT
AGGTGTGGATGCTTGTTTTGACCTTTTCCTTGACATACAGAAAGAATAAACATGAAATAAATGGCGATATGGAAATGAAATTCATAAAAGAGTACGTATA
AGCTAGTACTCCTGTGAAAATATCGCTTCATATACCTCCATGATTCAGTAACATGAATATCATACCATTGGCACCAGCAAAATTTTTATGCATAGACGAT
TTGTATCTTGAGGTACATATTTTTTATTTTTACCATTGTTTCTCGAGTTTACTGGTCAATTGAGCAACAGCGGTACTTCTAACTGTTAATATCACTTGGT
TTTCTATGTATCCTTCTTGTTGTGGCTTTTGTTGCTTCATAGCAATTCTGCTTACACTATTGGCATCTGTTATTCAGAAAATCATTTTGCTAACTGTTTT
TAGATTTCCTTTGTTTTTAACCTCCAAGTTGCCACATAATGCATAAACATACAGAGTAAGTTAACCTCTCTGAAATATGGATGTTAGATACTCAAGACAA
GTTCAGCATGTGTTGGGTGATGTTTTTTGAGTTTGTAGTTGCCATAAGATTGACAGTAACAAGGTGCAGTGAATACGGCGCCATATCTTGGTTCTTGGAC
CAATGCAATCAGCGAAGTCCATATCGTGGCAAAAGGATGTGCATGGATTGCCCATCGTTTGCAAACTTGAGGATGGCCTGCCCTGATGCCCTCAAATGCG
GAAGTGTGTGGTTCATGAAAACGTGAGAAGCCAACTAGTGGAGTAACGGGGGTACCAGTGCGGCCACTATGAAGAAAGTTAATTTCTGAGAAAATTAAGA
CTTTAGCCTGTTGTTTTCAAGCAACTTGTACCGCATTGCACTACCATGCAATGCTTCTCCTGCCTATAGAATACTCTGCAAGCCTCTTGTATTGTACACT
GTATTGTCTTGTTTAAAGTATGTTTGTTTCTGCTTATGTGGAGATTACGAATTGCTCGATTACTTTCATCCTATGCATTGCTGTTGATGCATTAACCGAG
TGAGATCGACTAGTTCTTCTTCCTGCTCCAGAACACGCTTGATAATTGAGAAGTTTGTAGGGGCATTATAGTTGAACACAGTGCCCTAATCTAGGAACCT
GCAGCAATCTGCCCCCTTTGGCTCATGCGTGGCTTGCAGCTCTTGCCAACCTCAAGTTCATCAGAAGCTTCTGAACTATCGGATTGTGTGCACTTATTCA
GCTCTGAGGGGAGTTCGCTGGAGTTCTCCAGTTAGATGGGTTGGTTCTATAGGAGTGTATACTGTTTATTGAGCCTAGTTGTGGTACTATCAGCATTAGG
CACAACCCGCATCAGTTTTATTTATGGCATCTGGAAGAAGAAGATAGGAAAGAAGTTGAATAGTAAAGTTTGCGTCTATGTATATAGTAAACAATGTATA
TGTAATTCAGTAATA