Detailed information on CNT30603622


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0JC10|DCAM_ORYSJ, E-value = 7e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676381Oryza punctataSetaria viridis77.238.4385.91518forward
CNT30523930Oryza punctataSetaria italica30.721.5388.35206forward
CNT30189315Oryza punctataSecale cereale37.8590.7190.16254forward
CNT30290085Oryza punctataTriticum aestivum28.4612.6787.43191forward
CNT30387278Oryza punctataTriticum turgidum28.4614.784.82191forward
CNT30552730Oryza punctataOryza glaberrima40.2462.597.41270forward
CNT30459979Oryza punctataSaccharum spontaneum80.3328.5587.01539forward
CNT304233Oryza punctataZea mays23.118.9785.81155forward
CNT30347470Oryza punctataEragrostis tef47.6928.4784.69320forward
CNT30364644Oryza punctataSorghum bicolor33.8325.7189.87227forward
CNT30595688Oryza punctataOryza meridionalis42.3244.7984.51284forward
CNT30369690Oryza punctataOryza glumipatula81.8255.0197.09549forward
CNT30100535Oryza punctataOryza rufipogon81.8229.3197.27549forward
CNT30575376Oryza punctataOryza barthii54.9937.3197.02369forward
CNT30115991Oryza punctataOryza nivara81.8255.2997.45549forward
CNT30558443Oryza punctataPanicum hallii77.235.5881.27518forward

Expression of CNT30603622

Peptides detected in this lncRNA

>peptide 1 (41 aa)
GDDFSGSSEALVNKQTPGRQLLLNHVAARISPNIQSLTPVT*

>peptide 2 (30 aa)
MSHESTSQLQVAEIALQQAQESSEQRAGAW*

>peptide 3 (52 aa)
MMSEIPESLVISLAHVVCPSAEVLKKTEAFFLSSPVMHISRVTTGCSGCWVA*

>peptide 4 (51 aa)
MNVPREYFTASSGRDSSSASSRILGTASRSLVVPQVLITILYGYTKRLDSER

>peptide 5 (61 aa)
MPLLPWLCRISNHICVATRFEATEVAVQDCNLLREVLVWRGLCFRENECPTRVLHSFKWQR*

Sequence

>CNT30603622
CTGGTGATGATTTCAGCGGTAGCAGTGAAGCTCTGGTAAATAAGCAAACCCCCGGAAGGCAGCTCCTGCTCAACCATGTTGCTGCAAGAATAAGCCCCAA
CATCCAGTCCCTTACCCCAGTCACATGAATGGTTGAGAAAGCAGGGCCATGGATGGCGTTCATGGAGTAGCCGCAGGGCTCGAAATCGAAGTCGCAGATT
TCCATCTCGGGGATGATGTCAGAGATACCTGAGAGCTTGGTCATTTCCTTAGCACATGTTGTGTGTCCATCAGCAGAGGTCTTGAAGAAGACAGAAGCTT
TCTTCTTGTCCAGCCCAGTCATGCACATCTCAAGAGTGACCACAGGTTGCTCTGGGTGCTGGGTAGCATAGTAGACATGCCACTTCTGCCCTGGCTTTGC
AGGATCTCCAATCACATATGCGTTGCCACCAGATTTGAGGCCACTGAAGTAGCGGTTCAGGACTGCAACCTCCTCAGAGAAGTTCTTGTGTGGAGAGGGC
TGTGCTTCAGGGAAAATGAATGTCCCACGAGAGTACTTCACAGCTTCAAGTGGCAGAGATAGCTCTTCAGCAAGCTCAAGAATCCTCGGAACAGCGAGCA
GGAGCTTGGTAGTCCCACAGGTCTTGATCACAATCTTGTATGGGTACACAAAGAGGCTCGATTCAGAGAGG