CANTATAdb - search

Detailed information on CNT30603551

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30675385	Oryza punctata	Setaria viridis	8.56	22.06	90.67	75	forward
CNT30246648	Oryza punctata	Avena sativa	44.98	37.56	82.74	394	forward
CNT3066684	Oryza punctata	Leersia perrieri	36.19	100	94.01	317	forward
CNT30149227	Oryza punctata	Brachypodium distachyon	23.29	78.46	84.31	204	forward
CNT3099828	Oryza punctata	Oryza rufipogon	47.72	100	98.09	418	forward

Expression of CNT30603551

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MPFRCSPWMSLLEFICPLFKMSRRTDMLSARTCALGCERQRMVVDRRHCIRLERPSATATPESPHSTMRWTALAVTSNSCSYSIPR*

>peptide 2 (54 aa)
MVWPCQQVSGQPSSFAAAVRKASVSPVARRLWASHSMHLSTSACQLMMLAAKHW*

>peptide 3 (29 aa)
MERFLSYRHTSYSTSSFHMLEHLMSAVAH*

Sequence

>CNT30603551
TTAAAAAAAGAGAGTTACAGATGACCCACCGGTGAACGTTCACGAACTACGAGCAAAACGGAAATTGCTGAATATTAATTTGCAAGTTCAGCAGGAAACT
GAAATAGATACAACAGCAGAAAAGGATATACCTCTGCTTCTCCGGTTACCATATGGAAAGATTTTTAAGTTACAGACATACAAGTTACAGCACAAGCAGT
TTTCATATGCTTGAACATCTAATGTCAGCGGTAGCACATTAACCAAAAGTAAAGTAAAAATCACATCTTGGGAGCAAGCCCCGTATCATGCTTGGGAACA
TCAGCTAATATCAGTCTTAAATCACATCTCAGGAAACTGACCGGCAAGTCATCCTTTCCTACTCGCTGATCCTACAGCAGCTGTTTGCAGTGACACTCAT
GGTGTGGCCTTGTCAGCAAGTGAGTGGGCAGCCGAGCTCCTTCGCCGCCGCGGTGAGGAAGGCGAGCGTCAGCCCGGTGGCGCGGCGGCTGTGGGCTTCC
CACTCTATGCATCTCTCCACATCGGCTTGCCAATTGATGATGCTTGCTGCCAAGCACTGGTAGGTTGAGCTCTTGATGCCATTCCGGTGTTCCCCTTGGA
TGAGCTTACTGGAGTTTATTTGTCCGCTGTTCAAGATGTCGCGAAGGACGGACATGCTGAGTGCACGGACATGCGCGCTGGGGTGCGAAAGACAGCGGAT
GGTGGTTGATAGACGGCACTGCATCAGATTGGAGAGGCCATCAGCGACTGCTACACCTGAATCTCCCCATTCGACGATGAGATGGACTGCTCTGGCGGTT
ACTTCCAATAGCTGCTCGTATTCGATCCCAAGATGAACCGGTCAGTAAGCGAGATGAACCGTACAAAGTAGAACTG