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Detailed information on CNT30603545


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690471Oryza punctataOryza sativa23.5347.5190.32124forward
CNT30674416Oryza punctataSetaria viridis13.0920.3594.269forward
CNT30552242Oryza punctataOryza glaberrima21.2526.6796.43112forward
CNT3014691Oryza punctataZea mays14.6126.8390.9177forward
CNT3066598Oryza punctataLeersia perrieri20.4917.9492.59108forward
CNT30595582Oryza punctataOryza meridionalis72.877385.16384forward
CNT30369166Oryza punctataOryza glumipatula21.2521.7196.43112forward
CNT3099716Oryza punctataOryza rufipogon21.2519.7996.43112forward
CNT30574883Oryza punctataOryza barthii21.2533.1496.43112forward
CNT30115583Oryza punctataOryza nivara21.2526.9995.54112forward

Expression of CNT30603545

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MTTTTTYGHTYTYTVHRFDRSMIDGDVRRSISRT*

>peptide 2 (77 aa)
MATYADRSVGLEQEALLALVVLAGAGVDVLLHLGLAHHQVVVAVVVVVVVVVVEAAGGGHRPHLLGAVVHLLVVSHC*

Sequence

>CNT30603545
TGATCGATCGGTGATAATTAGGACAAGCTTTATTATATTCAGGTCACGAATTTATTTTTCATACCCCCCCTCCATTCGTACGTAGTTCGCACAGAGAGAA
GGCGCTAAGCTAAGCTCCGTGTACGCACGTACACACGCACGATATACACGTAAGCTAGCTAGCCACATGACCACCACGACTACGTACGGGCACACATATA
CGTACACGGTACACAGGTTCGATCGATCGATGATCGATGGCGACGTACGCCGATCGATCAGTCGGACTTGAGCAGGAAGCTCTGCTTGCGCTCGTGGTAC
TCGCCGGTGCAGGTGTTGACGTCCTCCTCCACCTTGGTCTCGCGCACCACCAGGTAGTCGTTGCCGTGGTTGTGGTTGTGGTTGTGGTTGTGGTGGAAGC
CGCCGGCGGGGGTCACCGACCTCACCTCCTCGGAGCAGTAGTCCACCTCCTGGTAGTGAGCCATTGTTAGTTAGGGAGTGTGAGGTGAGGTGGTCGTGAT
GAGCGAGAGATGGTTAGGGCTTTGTGG