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Detailed information on CNT30603529


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 2e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30530404Oryza punctataEucalyptus grandis45.197.1885.51345forward
CNT30316147Oryza punctataCorylus avellana45.3646.5883.86347forward
CNT30277485Oryza punctataChenopodium quinoa2017.9483.66153forward
CNT3021362Oryza punctataCitrullus lanatus22.6126.5779.77173forward
CNT30503775Oryza punctataNicotiana attenuata20.5235.4480.89157forward
CNT3091042Oryza punctataSolanum tuberosum23.1448.4979.66177forward
CNT30590847Oryza punctataMusa acuminata28.3747.4881.57217forward
CNT30539234Oryza punctataBrassica napus48.2440.3381.3369forward
CNT30508626Oryza punctataSolanum lycopersicum23.1452.3780.23177forward
CNT30143836Oryza punctataMedicago truncatula23.1430.3681.92177forward
CNT30244810Oryza punctataAvena sativa47.8445.381.42366forward
CNT30261302Oryza punctataBrassica rapa47.7170.681.64365forward
CNT30363710Oryza punctataSorghum bicolor30.5939.8694.44234forward
CNT30360575Oryza punctataLactuca sativa31.6340.1380.17242forward
CNT30424172Oryza punctataPapaver somniferum23.1425.3681.92177forward
CNT30645151Oryza punctataCannabis sativa21.0516.8984.47161forward
CNT3055709Oryza punctataAmborella trichopoda19.7423.0982.78151forward
CNT30319856Oryza punctataAsparagus officinalis34.5194.2983.33264forward
CNT30574680Oryza punctataOryza barthii50.0741.8196.34383forward
CNT30499107Oryza punctataDigitaria exilis37.9174.1786.9290forward
CNT30115589Oryza punctataOryza nivara50.0726.8496.34383forward
CNT30594668Oryza punctataEragrostis curvula23.2752.8285.39178forward
CNT30550386Oryza punctataOryza brachyantha35.9510098.55275forward
CNT30726386Oryza punctataLupinus angustifolius20.7817.6980.5159forward

Expression of CNT30603529

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MGSTTSWRITSKRGFARWCATLSLRPVKKLSTTITLSPRSTSRSTRWLKVAAAAETARPDEASEEEAEGA*

>peptide 2 (40 aa)
MRRRRRRPRGRRGRRGRRRGAYRRGRRRGGARRRRSGRRG*

Sequence

>CNT30603529
ACCAATGGGGTTAACATTGCCCCAGTAAGTCTCCACCTGAGGGTGCTGGAGGGGATCACCATAGACCTCACTGGTGCTGGTTAGGAGAAACCTTGCCCCA
ATCCTCTTGGCCAATCCAAGCATGTTCAGTGTTCCAACAACATTGGATATGATGGTCTTGATGGGGTTGTACTTGTAGTGCACGGGGCTGGCGGGGCAGG
CGAGGTGGTAGATCTGGTCGACCTCGAGCAGGATGGGCTCGACGACGTCGTGGCGGATCACCTCGAAGCGCGGGTTCGCGAGGTGGTGCGCCACGTTGTC
CTTGCGCCCCGTGAAGAAGTTGTCGACGACGATCACGCTGTCGCCGCGCTCCACCAGCCGGTCCACCAGGTGGCTGAAGGTGGCGGCGGCGGCCGAGACG
GCGCGACCGGATGAGGCGTCGGAGGAGGAGGCCGAGGGGGCGTAGAGGGAGAAGAGGGCGGCGGCGAGGAGCATACCGGCGAGGGCGAAGACGGGGCGGT
GCTCGGCGGCGGCGTAGCGGGCGGCGCGGGTGAGCCAGGAGAGCGGCTTGGAGGGCTTGGGGGAGTACTCCCCGCCGTCGGAGGCGGAGCCCGGGGCCGC
GCCGCCGCGGTACGTGAGCTCCGACGCCATCTCCGCCGGCGAAAGGTCTCAGATGCAAAAGCCTCTCTCTCTCTCTCTACGTGGGACCCACGCTCTATAA
TTGCGTGTAAGGACGAGGGGGGGACTGGAGAGTCGGATTTCTCTCCGCGCCGTCGGCGAGGTTTA