Detailed information on CNT30603526


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690016Oryza punctataOryza sativa99.1510093.62580forward
CNT30552290Oryza punctataOryza glaberrima10084.0593.68585forward
CNT30595586Oryza punctataOryza meridionalis80.1710094.88469forward
CNT30369171Oryza punctataOryza glumipatula10098.8293.33585forward
CNT3099731Oryza punctataOryza rufipogon10058.8593.5585forward

Expression of CNT30603526

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLRCIKEESPSFVSNQWGYLLTLLNTNRRWQLLVKASK*

>peptide 2 (45 aa)
MQLLRWVPELARLKWKSEIHVEVYQGRKPILRQQPMGLSVDFAEH*

Sequence

>CNT30603526
GTGAGGTTTCTTTGGAGACAGGGGCCTTCACCTCTTCAGCATTTAAACTCCACTGATCCATTATAAGTGGGCAACTTTGTGGCATCAAAGCGTTTTGTGG
CGCAGTTGGCAATGTTGATTGATTAATTCCTTCAGCAAGACTCTCACTTGGAGGGAATGCAGCTATTGCGGTGGGTACCTGAGCTTGCACGTTTGAAATG
GAAGTCAGAGATACATGTTGAGGTGTATCAAGGAAGAAAGCCCATCCTTCGTCAGCAACCAATGGGGCTATCTGTTGACTTTGCTGAACACTAATCGTAG
GTGGCAGTTGTTGGTCAAAGCCAGCAAATAGATCTATTGATGGAGGGGTAGAGGAAATTGATGGTTCCTGCAAAGTCGGCAGACTCAAGAGATCTTGATG
GACAGGATGAGATGTAGAGGGTGCTTCGGCTTGAACTGGTGGTGAAGATGCCACGGCTTTCTGAACCACATCGTCATGCAGAGTTTCTTTAGGAACAGAA
TGGCCACCTAAATCAACTGCTCTATGAGAAACTGACAGAGTCTGTTGATTAAAGCCAGCAAAAAGATCTATTGGTGCTGCAGAAT