Detailed information on CNT30603500


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000009, E-value = 1e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30710098Oryza punctataGlycine max50.5841.494.62130reverse complement
CNT30227123Oryza punctataHordeum vulgare89.1160.5894.32229forward
CNT30510842Oryza punctataSolanum lycopersicum23.3511.0393.3360forward
CNT30554621Oryza punctataOryza glaberrima50.9760.9396.95131forward
CNT3068221Oryza punctataLeersia perrieri61.0953.5891.08157reverse complement
CNT30126841Oryza punctataCorymbia citriodora59.5341.1392.16153forward
CNT30370808Oryza punctataOryza glumipatula50.9760.3797.71131forward
CNT30574740Oryza punctataOryza barthii86.3845.1294.14222forward
CNT30336936Oryza punctataCynara cardunculus24.126.393.5562reverse complement

Expression of CNT30603500

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSKCIGRGAFRLRGKQPQKQESMKRKREYHLE*

>peptide 2 (34 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRKSRNR*

Sequence

>CNT30603500
GTGCTTGACAGTCAGGAGGTTTAGCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCT
AAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCAAAAGCAGGAATCGATGAAGCGGAA
ACGAGAATATCATCTTGAGTAACGAAAATATTGGTGAGAATCCCGTGCCCCAAAAAC