Detailed information on CNT30603436


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690610Oryza punctataOryza sativa99.630.2294.84252forward
CNT30185545Oryza punctataSecale cereale56.9270.2484.03144forward
CNT30455311Oryza punctataSaccharum spontaneum32.417.3293.982reverse complement
CNT30353440Oryza punctataEragrostis tef43.088.3382.57109reverse complement
CNT30595519Oryza punctataOryza meridionalis80.6310096.57204forward
CNT30369233Oryza punctataOryza glumipatula80.6366.8996.57204forward
CNT3099654Oryza punctataOryza rufipogon80.6347.8996.08204forward
CNT30574824Oryza punctataOryza barthii80.6397.6196.57204forward
CNT30497582Oryza punctataDigitaria exilis80.6397.6188.24204forward
CNT30550503Oryza punctataOryza brachyantha88.5448.2891.96224forward

Expression of CNT30603436

Peptides detected in this lncRNA

>peptide 1 (31 aa)
LIMNLIDDMIWSCVQSSFPQPEKMSTSIYFV*

Sequence

>CNT30603436
CCTCATAATGAATCTGATTGATGATATGATCTGGTCGTGTGTCCAAAGTTCCTTTCCTCAACCAGAAAAAATGAGCACCTCTATCTATTTTGTGTAGTCC
TGCTAGCCTGAGGACACAGCCTCCTGCTTCAAGAACTACATTCTCTGCTTTTAGAAGGACATCAGTACGAGAGCTTCTGCCAGTTGGCACAGATGGGCAA
TCCTACACAATAAGAAGAATAATTATGATTAAAACAAAAACAATAAAGTTTTC