Detailed information on CNT30603422


BLAST search results

BLAST vs Swiss-Prot:
sp|C0LGD6|Y1570_ARATH, E-value = 1e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552205Oryza punctataOryza glaberrima27.6854.2493.83243forward
CNT30109957Oryza punctataOryza longistaminata41.5795.392.05365forward
CNT30574953Oryza punctataOryza barthii36.4559.792.19320forward

Expression of CNT30603422

Peptides detected in this lncRNA

>peptide 1 (29 aa)
TLSPRIPPISQWMPRRCLSIGDPLASTLR*

>peptide 2 (69 aa)
LSLPESPQSPSGCRGAAFRSAIRLLRRLGSSPSPTTAGRPSEEASPRADHGWLDGRRPTTERGRLAEHP*

>peptide 3 (76 aa)
MCSCNIMLIIPSSEAVAIRTSEYTSNALMSGGSSVVGCLRNVKVELTLRKNRPFWYMLSTCKGDGEKPANSSSPSL*

>peptide 4 (38 aa)
MLLYSSSPYLLVWHRSFQLYFSTWDLKKQHEEHEGIRN*

>peptide 5 (42 aa)
MIATTGTITAMSNVAVFFFALSAGVAQELSIIFQHMGFKKTT*

Sequence

>CNT30603422
CACTCTCTCTCCCAGAATCCCCCCAATCTCCCAGTGGATGCCGCGGCGCTGCCTTTCGATCGGCGATCCGCTTGCTTCGACGCTTAGGTAGCTCCCCGAG
TCCTACTACGGCCGGGCGCCCGAGCGAGGAGGCATCGCCGCGCGCGGATCATGGTTGGTTAGATGGCCGGCGGCCGACGACCGAAAGGGGTAGGCTAGCA
GAGCATCCATAGAATTAACACAAGTATGATAGCTACAACAGGAACTATCACTGCAATGAGCAATGTTGCTGTATTCTTCTTCGCCTTATCTGCTGGTGTG
GCACAGGAGCTTTCAATTATATTTCAGCACATGGGATTTAAAAAAACAACATGAAGAGCATGAAGGAATAAGGAATTGATATATATGTTTACACTGCAAT
CTTATATGTTTACTATAAATAAGATGGAGACAGTAAATTACGTAGCTGCTGAGTAATTTTTGATATGTTAATACTGCCTTTAACTTTATACGAAATCATT
CTTCAACTTTCTATAAAGCTCATGAGTTATATTGTGGACTAATGCTGAGATGCTGCTACACAGATCCTATGAACCTGCAGCATACATGATGAATGTGTAA
TGTGCTCTTGCAATATAATGCTGATCATACCATCATCAGAAGCAGTGGCTATCCGGACAAGTGAATACACCTCGAACGCGTTGATGAGCGGTGGGAGCTC
CGTTGTGGGCTGCTTGCGCAATGTGAAAGTTGAGCTCACACTGCGCAAGAACCGGCCATTCTGGTACATGCTGTCCACCTGTAAGGGGGACGGTGAGAAG
CCGGCGAACAGCTCCTCGCCATCGCTGTAGATATCGAACAATCTGTTTGTTCTGTTGGCTATCTCAGCAAAGTGAAAG