« Back to Galdieria sulphuraria search


Detailed information on CNT30602704


BLAST search results

BLAST vs Swiss-Prot:
sp|P22852|TBB_POLAG, E-value = 8e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30196370Galdieria sulphurariaPisum sativum23.3615.3283.56146forward
CNT30209019Galdieria sulphurariaHelianthus annuus21.9216.4183.94137forward
CNT30422340Galdieria sulphurariaPapaver somniferum48.1635.5481.4301forward

Expression of CNT30602704

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MQKCLATKHSSKLFTHSLKKFLYRCGISNERCRLFHP*

>peptide 2 (36 aa)
MLLSASVNSISSIPSPVYQCKNALRRNIAVNCSPTL*

Sequence

>CNT30602704
CCAAACTCCTCGTGTCAGATATGTTTGAGTAACCAGGATTACCTGCACCTTTAAGCGTGAGACAAAAATAGAAGCTTCCTCATAGCAGTGTTTTGAAAAA
AGTAGTCTATTGTTACCAACTTGCACTACAGTTAACTCCGTACAACAACTCTTTCACAATCTAGTTAACGAATAGATATTGTGGCTGCAAACAGAGCACA
AATGGATTACTACCAACAGGTTTCTTTTATTCAAGCACTTAAATGGCTATTTTAAAAGGCCTCCTCTTCTTCGAGGCCCATATCGAAGTCATCTTCAGCA
GTGGCTTCTTGATATTGTTGGTATTCTGATACTAAATCATTCATGTTACTTTCAGCCTCTGTAAATTCCATTTCATCCATTCCTTCACCAGTATACCAAT
GCAAAAATGCCTTGCGACGAAACATAGCAGTAAATTGTTCACCCACTCTTTGAAAAAGTTCTTGTATAGATGTGGAATTTCCAACGAACGTTGCAGACTT
TTTCATCCCTGAGGGAGGAATATCACAGAGTGAGCTTTTAATGTTGTTGGGAATCCATTCTACAAAGTAGGAAGAATTCTTGTTCTGAATATTGAACATT
TGGTCATCTATATCTTGAGTAGACA