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Detailed information on CNT3060146


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30612022Arabidopsis lyrataArabis alpina28.786.0486.52141reverse complement
CNT30480070Arabidopsis lyrataArabidopsis halleri26.3332.3392.25129reverse complement

Expression of CNT3060146

Peptides detected in this lncRNA

>peptide 1 (33 aa)
VVHAERFRRIDLATYVTKVHLSFRSTVLRELHI*

Sequence

>CNT3060146
GTGGTGCATGCGGAGAGGTTTAGAAGAATTGATTTGGCCACCTATGTCACCAAAGTGCACTTATCTTTTCGGTCAACTGTCTTGAGAGAACTCCACATTT
AAAGGTGCTTGAGCTAGAGCAATTTCAAGATGGGTAACCTTCCGAGAAGTGATTGTCAAAACTGTGTGAGTGAGGACAAATCACAGCAAAAGATCATGTG
GTGATTTGTAGGATCTATAAACAAGTATTTAAAGCCTCCCAGACATAGCGGACCGACCGTATGGTGGGTCCACGGACCGAGAGAGGACGTGGAGTCCATT
AAGAGAGATGGCGATCGGAACGTTACACTACCTAATATGTTAGATAGATTTACATTTAACAAGCAAAAACAAAGGATAAATAGTACAGTGTATTTGTGAT
ATAGTACAATATGTTTCATCTTTTATCGTCAGACACTAACTCGCATGCTCGAATGTGTGATCTAGCGTCAAATGAATTAATCAACAATTA