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Detailed information on CNT3060130


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLX0|RK16_NASOF, E-value = 9e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693928Arabidopsis lyrataOryza sativa40.688.9284.99373forward
CNT30641762Arabidopsis lyrataNymphaea colorata30.438.0487.46279forward
CNT30516020Arabidopsis lyrataJuglans regia5.562090.251reverse complement
CNT30405603Arabidopsis lyrataBeta vulgaris42.8651.4488.04393forward
CNT30198977Arabidopsis lyrataPisum sativum29.9914.7885.82275forward
CNT30503443Arabidopsis lyrataNicotiana attenuata31.384.9187.11287forward
CNT3048583Arabidopsis lyrataPrunus dulcis35.8852.1489.67329forward
CNT30185636Arabidopsis lyrataSecale cereale27.1516.0687.55249forward
CNT30294378Arabidopsis lyrataTriticum aestivum31.5214.1687.2289forward
CNT30224357Arabidopsis lyrataHordeum vulgare31.1918.9480.42286forward
CNT3086712Arabidopsis lyrataVigna radiata23.0170.8188.63211forward
CNT30540371Arabidopsis lyrataBrassica napus52.0278.9795.39477forward
CNT30555950Arabidopsis lyrataOryza glaberrima40.6824.6284.99373forward
CNT30442098Arabidopsis lyrataAegilops tauschii31.5243.6687.2289forward
CNT30243771Arabidopsis lyrataAvena sativa33.4826.6386.32307forward
CNT30656274Arabidopsis lyrataTriticum dicoccoides26.1748.1987.92240forward
CNT30311863Arabidopsis lyrataCamelina sativa84.1947.2798.06772forward
CNT3083474Arabidopsis lyrataBrassica juncea100.8727.795.35925forward
CNT30598237Arabidopsis lyrataFraxinus excelsior24.3236.2682.06223forward
CNT30447455Arabidopsis lyrataSaccharum spontaneum33.4842.7685.02307forward
CNT30134355Arabidopsis lyrataLolium perenne31.7311.5686.6291forward
CNT30229832Arabidopsis lyrataAnanas comosus31.5224.5787.2289forward
CNT30655378Arabidopsis lyrataRosa chinensis43.1826.6789.14396forward
CNT30689030Arabidopsis lyrataTriticum urartu31.526.3887.2289forward
CNT30620547Arabidopsis lyrataCajanus cajan17.3450.6486.79159forward
CNT30357951Arabidopsis lyrataLactuca sativa42.7541.6687.5392forward
CNT30371107Arabidopsis lyrataOryza glumipatula27.9260.6682.03256forward
CNT30411335Arabidopsis lyrataPapaver somniferum43.294685.89397forward
CNT30574575Arabidopsis lyrataVitis vinifera43.1825.9590.4396forward
CNT3025585Arabidopsis lyrataPopulus trichocarpa24.4353.2185.27224forward
CNT30585636Arabidopsis lyrataEchinochloa crusgalli30.644.985.77281forward
CNT30604550Arabidopsis lyrataOryza punctata28.0311.7385.21257forward
CNT30550799Arabidopsis lyrataOryza brachyantha26.9418.3484.21247forward
CNT30336889Arabidopsis lyrataCynara cardunculus43.1846.2186.36396forward
CNT30724130Arabidopsis lyrataLupinus angustifolius20.3955.9987.17187forward

Expression of CNT3060130

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MLFTKSGSFWVIHSNFIKVVLMEIFIQSYRIADFILKHKKEDCNFLLLYSVILHSFRFLSPDKM*

Sequence

>CNT3060130
GGTTTTTATAGGCATTTTTGATGCCGCTATTGAAATAGCTTTTCTGGCTATATTTTCGGGTACACCACCCATTATATAAAGGATTTTACCTGGTTTAGCC
ACAGCTACCCAATACTCGGGGGATCCTTTCCCAGAACCCATACGCGTTTCCGCAGGTCTTACTGTAACTGGTTTGTCTGGAAATATACGTACCCAAATTT
TTTCACCACGTCGTACATTTCGTGTCATTGCTCGTCGCCCTGCTTCTATTTGTCTAGATGTGATCCAAGCGGGTTCAAGTGTTTGAAGAGCATATCTGCC
AAAACAAATACGATTCCCACGAGAAGATATTCCTTTTAGTCTTCCTCGATGTTGTTTACGAAATCTGGTTCTTTTTGGGTTATACATAGCAATTTTATCA
AAGTAGTTTTGATGGAAATTTTTATTCAATCTTATAGAATTGCTGATTTTATTCTTAAACATAAAAAAGAAGACTGCAATTTTTTATTACTGTATAGTGT
TATACTACATAGTTTTCGTTTTTTATCACCGGATAAAATGTAAAGATAAAGAAAGTTTTTTTATTCTTCGTCTACGAATATCTAAATTTTTATTCCTAAG
ACCCCATAAATAGTTCGAACTGTATAGGAACAATAATCAATTTTAGCTTCAATTGTTTGTAAAGGAACTCTGCCTTCTCTGATCCATTCAACACGTGCAA
TTTCTTTTCCGTCGATACGTCATGCAATTTGTACTTGAATTCCTTTTGTATTCGCCTGTTCAGTTAATTCAATAGCTTTTTTCATTGCTTTTCGAAAAGA
AACGCGATTTTTTAATTGTCCAGCTATAAATTCTGCAAGAATATTAGGATCCCCATACGGATTGGAAATTCTGGTAATAGCAATGTTGAGTTTTCTATTG
ACACAATTAAGTTCTTT