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Detailed information on CNT3060115


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QK26|RBL_ARAHI, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Arabidopsis lyrataOryza sativa46.924.0786.511112forward
CNT3019929Arabidopsis lyrataCitrullus lanatus17.4695.3986.96414forward
CNT30629265Arabidopsis lyrataVigna unguiculata11.1323.3294.7264forward
CNT30201083Arabidopsis lyrataPisum sativum48.4253.7790.591148forward
CNT30182717Arabidopsis lyrataSecale cereale46.0166.9386.981091forward
CNT30290424Arabidopsis lyrataTriticum aestivum46.0168.2387.081091forward
CNT30225281Arabidopsis lyrataHordeum vulgare13.6296.4289.47323forward
CNT30565170Arabidopsis lyrataActinidia chinensis29.8261.9192.22707forward
CNT3089355Arabidopsis lyrataVigna radiata18.9875.588.22450forward
CNT30541452Arabidopsis lyrataBrassica napus51.6273.4397.141224forward
CNT30239042Arabidopsis lyrataBrassica oleracea28.0156.2796.54664forward
CNT30554212Arabidopsis lyrataOryza glaberrima34.2921.5587.21813forward
CNT30146680Arabidopsis lyrataMedicago truncatula22.1841.9889.35526forward
CNT30434683Arabidopsis lyrataAegilops tauschii18.9875.6385.33450forward
CNT30257373Arabidopsis lyrataAvena sativa27.9699.8586.43663forward
CNT3017995Arabidopsis lyrataZea mays33.7451.7886.25800forward
CNT30606537Arabidopsis lyrataGossypium raimondii30.0342.3687.36712forward
CNT30682029Arabidopsis lyrataTriticum urartu33.7475.8387.62800forward
CNT30622174Arabidopsis lyrataCajanus cajan15.9451.9289.42378forward
CNT30595572Arabidopsis lyrataOryza meridionalis15.7343.5288.74373forward
CNT30355674Arabidopsis lyrataLactuca sativa25.7782.7991.98611forward
CNT30480921Arabidopsis lyrataChara braunii7.8424.4784.41186forward
CNT30434475Arabidopsis lyrataPapaver somniferum11.1368.7594.32264forward
CNT3058691Arabidopsis lyrataAmborella trichopoda14.2175.3987.54337forward
CNT30323704Arabidopsis lyrataAsparagus officinalis9.3274.4190.95221forward
CNT30121217Arabidopsis lyrataCitrus clementina19.1150.591.39453forward
CNT30100001Arabidopsis lyrataOryza rufipogon10.6798.0686.17253forward

Expression of CNT3060115

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MQDGVEEAGILGSSPDTKDYNTPKNPCFV*

>peptide 2 (39 aa)
MHYDRNSQFSGKYSSFDHFFACTRNSIQIMPFDFTCFSL*

>peptide 3 (47 aa)
MKNFFSKISYTNIKYKIKKLFLFQYGMKRKGQHAGWGRRSGDTWFKP*

>peptide 4 (45 aa)
FNEKIEKCKIFLNSSFSIQSKQNISMQLLRLLSKSKVIEINKFQF*

Sequence

>CNT3060115
CATTCAATGAAAAAATTGAAAAATGCAAAATTTTTTTGAATAGTTCATTTTCTATTCAGAGTAAGCAAAACATATCGATGCAATTGCTAAGATTATTAAG
TAAAAGTAAAGTAATTGAAATTAATAAATTTCAATTCTAAAAGAAAATAAGGATTTTCTTATATTGTGTAAAATTCTCATAAAAAAAAAAAAGAAATATT
TGTTCTTCGCTTATGAATATAAGGATATGAAGAACTTTTTTAGTAAAATCTCGTATACTAATATAAAATATAAAATAAAAAAACTTTTTTTATTCCAATA
CGGAATGAAAAGAAAAGGACAACATGCAGGATGGGGTAGAAGAAGCGGGGATACTTGGTTCAAGCCCTGACACGAAAGACTATAACACTCCTAAGAATCC
ATGTTTCGTATAGGATTTCTTGTGAACACTACAATAACAAAATTGTAGTTGTGTTTAATCTTCTTTTTTTTATTGAAGAGTTTTTTTATATCTAGATTTA
AGTATGTATCTATAAAAAAAAATAGTATATACAACAGATAAACTCGGCTCAATCTTTTTAGTAAAAAAAAAGATTGAGCCGAGTGCAATTAAACTAATAA
AACAAACGTGAATTACTAATCTAATTTATCTACTCTTGGCCATCTAATTTATCGACGGTTGGGAAGTTAAATCTGATCTCTTTCCATACTTCACAAGCAG
CAGCTAGTTCAGGACTCCACTTGCAAGCTTCACGGATAATTTCATTACCCTCGACTGCAAGATCACGTCCCTCATTACGAGCTTGTACACATGCTTCCAG
AGCTACTCGGTTAGCTACGGCACCCGGTGCATTTCCCCAAGGGTGGCCTAAAGTTCCTCCACCGAATTGTAGTACAGAATCATCTCCAAAGATCTCGGTC
AAAGCAGGCATATGCCAAACGTGAATACCCCCTGAAGCCACAGGCAGAACACCTGGTAGTGAGACCCAATCTTGAGTGAAAAAGATACCGCGGCTTCGAT
CTTTTTCAACATAATCATCGCGCAGTAAATCAACAAAGCCCAAAGTTGACTCCCTGTCTCCTTCAAGTTTACCTACTACTGTACCCGCGTGAACATGATC
TCCACCAGATAGACGTAAAGCTTTAGCTAGTACACGGAAGTGCATACCATGATTCTTCTGTCTATCAATAACAGCGTGCATTGCATGGTGGATGTGAAGA
AGTAGGCCATTATCTCGGCAATAATGAGCCAAACTAGTATTTGCGGTGAATCCCCCTGTTAAGTAGTCATGCATTACGATAGGAACTCCCAATTCTCTGG
CAAATACAGCTCTTTTGATCATTTCTTCGCATGTACCCGCAATAGCATTCAAATAATGCCCTTTGATTTCACCTGTTTCAGCCTGTGATTTATAAATAGC
TTCGGCACAAAATAAGAAACGGTCTCTCCAACGCATAAATGGTTGGGATTTCACATTCTCATCATCTTTGGTAAAATCAAGTCCACCACGTAGACATTCA
TAAACTGCTCTACCATAGTTCTTCGCGGATAACCCCAATTTTGGTTTAATAGTACATCCTAATAGGGGACGTCCATACTTGTTCAATTTATCTCTTTCAA
CTTGGATACCATGAGGTGGTCCTTGGAAAGTTTTAGTATAAGCAGGAGGGATTCGCAGATCCTCTAGACGTAGAGCAGCCAGGGCTTTGAACCCAAATAC
ATTACCCACAATCGAGGTAAACATGTTAGTAACCGAACCTTCTTCAAAAAGGTCTAAGGGGTAAGCTACATACGCAATAAATTGAGTTTCTTCTCCTGGA
ACGGGCTGGTAAGCCCATCGGTCCACACAGTTGTCCATGTACCAGTAGAAGATTCAGCAGCTACCGCAGCCCCTGCTTCTTCAGGTGGAACTCCAGGTTG
AGGAGTTACTCGGAATGCTGCCAAGATATCAGTATCCTTGGTTTCATATTCAGGAGTATAATAAGTCAATTTATACTCTTTAACACCAGCTTTGAATCCA
ACACTTGCTTTAGTCTCTGTTTGTGGTGACATAAGTCCCTCCCTACAAGTCATGAATTTAGAATTCTTGCAATAAAACAAAACAACAAGGTCTACTCGAC
ATAAATTAGGAATAGATTTAATTAACCTTTTTCACAGGAATCTTTCACAAAATTATCAACTAATCAGAATGATTCTTTATTAGACCATGATATTTGATTC
GCCAAATACATCATTATTGTATATTCTTTCATATGTATAGCGCAACCTAATACTTCTTTTTCAAGTTTTGAATCTTTGACTTTTTATAAATCCAAATATT
TAATATTAAAATATTAATAAAATCACTCTTGACAGTAATATATGTTGTATATGTAAATCCTAGATATGACA