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Detailed information on CNT30601056


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675951Fraxinus excelsiorSetaria viridis34.277.0880.54185forward
CNT30529934Fraxinus excelsiorEucalyptus grandis26.4334.2982.52143forward
CNT30702258Fraxinus excelsiorQuercus lobata26.4330.4384.62143forward
CNT30619260Fraxinus excelsiorSesamum indicum45.6623.1984.62247forward
CNT3020599Fraxinus excelsiorCitrullus lanatus32.3515.282.29175forward
CNT3072357Fraxinus excelsiorQuercus suber29.7615.6886.34161forward
CNT30380227Fraxinus excelsiorManihot esculenta26.9935.0182.19146forward
CNT30628366Fraxinus excelsiorVigna unguiculata25.699.7384.89139forward
CNT30543653Fraxinus excelsiorBrassica napus29.2122.981.01158forward
CNT3076639Fraxinus excelsiorBrassica juncea30.3125.6781.1164forward
CNT30612249Fraxinus excelsiorArabis alpina12.225.2989.3966forward
CNT30607325Fraxinus excelsiorGossypium raimondii46.9519.6981.5254forward
CNT30651401Fraxinus excelsiorRosa chinensis25.3251.1284.67137forward
CNT30680065Fraxinus excelsiorTriticum urartu19.2227.4481.73104forward
CNT3021984Fraxinus excelsiorPopulus trichocarpa46.2111.6982250forward
CNT30103811Fraxinus excelsiorOryza rufipogon24.425.7882.58132forward
CNT30578287Fraxinus excelsiorOryza barthii26.0626.7682.27141forward
CNT30723196Fraxinus excelsiorLupinus angustifolius33.2722.5884.44180forward

Expression of CNT30601056

Peptides detected in this lncRNA

>peptide 1 (86 aa)
NKFFTVRRQRSCRIQLKNLFPTYPSLQKRPLLQPKTKKLTATRNNTIMKNNHHILQVYGWFITNSSLSAFLSTCNLEVCKDPQLLR*

Sequence

>CNT30601056
AAATAAGTTTTTTACTGTGAGACGACAACGTAGTTGTCGTATTCAGTTAAAAAACTTATTTCCGACATATCCTAGTCTTCAAAAGAGACCACTTCTTCAA
CCAAAAACAAAAAAACTCACAGCTACAAGAAATAATACAATAATGAAAAACAATCACCACATTCTTCAAGTATATGGTTGGTTTATAACCAATTCATCAC
TTTCTGCCTTCCTCAGTACCTGTAATTTGGAGGTTTGTAAGGACCCTCAATTGCTACGCTAATGTAGTCGGCCTGATCCTTGGAAAGCTTAGTGAGCTTA
GCACCAAGTTTTCCAAGGTGAAGTGCGGCAACCTTCTCGTCAAGGTGCTTGGGCAAGACATAAACCTCCTTCTTGTACTTCCCGGTGCTCTTTTCCTTCC
ACAGCTCAAGTTGGGCAATAACTTGATTAGTGAAAGAGCATGACATGACAAAGCTAGGGTGTCCCAATAACTTGATTAGTGAAAGAGCATGACATGACAA
AGCTAGGGTGTCCAGTGGCACAACCCAAGTTCATTAGACGA