Detailed information on CNT30600961


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712870Fraxinus excelsiorGlycine max23.324.8188.7580forward
CNT3044711Fraxinus excelsiorPrunus dulcis31.7822.8585.32109reverse complement
CNT30387967Fraxinus excelsiorTriticum turgidum23.6213.5988.8981reverse complement
CNT30242955Fraxinus excelsiorAvena sativa23.628.6888.8981forward
CNT30667558Fraxinus excelsiorTriticum dicoccoides23.627.0788.8981forward
CNT30266045Fraxinus excelsiorBrassica rapa31.7824.686.24109forward
CNT30113381Fraxinus excelsiorFicus carica23.3217.9488.7580reverse complement

Expression of CNT30600961

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGQRLSLTSELKPVGGGAAKASLNRAFSSSD*

>peptide 2 (33 aa)
SSSRAGHVKSCLKLGGPPSKPKYSCVTDSEPVP*

Sequence

>CNT30600961
TCCTCGAGTAGGGCGGGACACGTGAAATCCTGTCTGAAATTGGGGGGACCACCCTCCAAGCCTAAGTACTCGTGTGTGACCGATAGCGAACCAGTACCGT
GAGGGAAAGGTGAAAAGCACCCCGACAAGGGGAGTGAAATAGAACCTGAAACCGGATGCCTACAAACAGTCGGAGCCATCATGGGTGACGGCGTACCTTT
TGTATAATGGGTCAGCGACTTAGTCTGACGAGCGAGCTTAAGCCGGTAGGTGGAGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTCAGTTCGTCGGATT
AGACCCGAAACCGAGTGATCTAGCCATGAGCAGGCTGAAGGTG