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Detailed information on CNT30600960


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT003133, E-value = 8e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672164Fraxinus excelsiorSetaria viridis19.2720.9482.76174forward
CNT30406993Fraxinus excelsiorBeta vulgaris18.2742.6487.27165reverse complement
CNT30162096Fraxinus excelsiorPistacia vera10.1930.9888.0492reverse complement
CNT30219690Fraxinus excelsiorHordeum vulgare19.4925.6984.66176reverse complement
CNT30401452Fraxinus excelsiorTriticum turgidum19.4942.7284.66176forward
CNT30437461Fraxinus excelsiorAegilops tauschii19.4965.1984.09176reverse complement
CNT30605645Fraxinus excelsiorGossypium raimondii10.7426.6585.5797forward
CNT30626675Fraxinus excelsiorDaucus carota19.4925.6283.52176reverse complement
CNT30683032Fraxinus excelsiorTriticum urartu19.4922.0384.66176reverse complement
CNT30346086Fraxinus excelsiorEragrostis tef19.4923.2284.66176forward
CNT30331625Fraxinus excelsiorDioscorea rotundata19.4955.3585.23176forward
CNT30581628Fraxinus excelsiorEchinochloa crusgalli9.0823.9887.882forward
CNT3039925Fraxinus excelsiorMarchantia polymorpha19.4935.4882.95176forward

Expression of CNT30600960

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGSENADMSNDKGCERHPRRKSKGSCLKLI*

>peptide 2 (36 aa)
NSEYSRVLSGRHTAGANVRREEGNNPDHHLRSPSHG*

>peptide 3 (30 aa)
QTPNTQEYYPADTRRVLTSVVKRETTLTTI*

>peptide 4 (34 aa)
MGTTLIIVGLVVSDGSRVLYSLNGLIVQRRGPRK*

Sequence

>CNT30600960
CAAACTCCGAATACTCAAGAGTACTATCCGGCAGACACACGGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCTGACCACCATCTAAGGTCCCC
AAGTCATGGCTAAGTGGGAAAGGATGTGAAGATCCCAAAACAACCAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAAAGCGTAACAGCTCACTGGT
CTAATTAAGGGTCTTTGCGCCGAAAATGTAACGGGGCTAAAGCCATGCACCGAAGCTGTGGATTCGCGTCTATGACGTGAGTGGTAGCGGAGCGTTCCCT
AGGCCGTTGAAGGAGGACCCGTGAGGGCCTCTGGAGGTATGGGAAGTGAGAATGCTGACATGAGTAACGATAAAGGGTGTGAGAGACACCCTCGCCGAAA
GTCCAAGGGTTCCTGCTTAAAGTTAATCTGAGCAGGGTTAGCCGGCCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAACCACGTTAATAATCGTGG
GCCTGGTGGTGAGTGACGGATCCCGTGTGTTGTACAGTCTTAACGGATTGATTGTGCAGCGAAGGGGTCCCAGGAAATAGCCCCACCGTATAGACCGTAC
CCGAAACCGACACAGGTGGACTGGTAGAGCATACCAAGGCGCTTGAGAGAACTCTGCTGAAGGAACTCGGCAAATTGCACGCGTAACTTCGGAAGAAGCG
TGACCCCATCATACGCAAGTGTGGTGGGGTGGCACAGACCAGGGGGTAGCGACTGTTTACCAAAAACACAGGGCTCTGCGAAGTCGCAAGACGACGTATA
GGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAAGTGGAGGGGTGCAAGCTCTGAAATGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCCTAAGG
TAG