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Detailed information on CNT3060074


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLU7|PSBJ_NASOF, E-value = 1e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30277508Arabidopsis lyrataChenopodium quinoa41.0227.4487.98233forward
CNT30555951Arabidopsis lyrataOryza glaberrima33.122.986.7188forward
CNT30679284Arabidopsis lyrataTriticum urartu30.6356.1386.21174reverse complement
CNT30354577Arabidopsis lyrataLactuca sativa42.0826.9490.38239forward
CNT30149874Arabidopsis lyrataBrachypodium distachyon33.4514.7486.84190forward
CNT30603960Arabidopsis lyrataOryza punctata33.114.8787.23188reverse complement
CNT30724340Arabidopsis lyrataLupinus angustifolius35.5625.991.09202forward

Expression of CNT3060074

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MNLILNMNHIRKYLLNRSQEYQLQYLLPKEESFQ*

Sequence

>CNT3060074
TCTATTATAGTATAGGTAGGCCTAATTTAAAATTTTAATGATAGATCTAATGATAAAAAATATTGTGTCAGCCGGGGAAGCAGGAAAAGGGAATTAAGTT
ATTCCCCTTTTTTATTCTATCTTTGAAAGGTTAAAAAAATACTATATGTTCGTAATCTACTAATCTAATTAAGTTCATTTTTCAAAAACACGATAAAAAT
TTGTTCTGATTATTAGCAGTTCAACGGGACCCCCTCGAATCAGACAAAGAAGGAAGAGTCGGGCCCCGTTGAGTTCTTATGTTTTCACGTCTATAACTCA
GCTCATCCAATTTCTACAGGGATGAACCTAATCCTGAATATGAACCATATAAGAAAATACCTATTAAACCGATCACAGGAATACCAGCTACAGTACCTAT
TACCCAAAGAGGAATCCTTCCAGTAGTATCAGCCATTTATCCCGCTTCCCTCCACATTTCATCGAGTGGTCATGCTAGAAACATAAACAGTCAAAGATAA
TTATTTTATATAATCCATCCGAATGGGATAAGAAAATTACTACTCTTTCTTTTTTATTTTATTATTCT