Detailed information on CNT3060034


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700594Arabidopsis lyrataQuercus lobata33.734.6683.61122forward
CNT30543367Arabidopsis lyrataBrassica napus94.4846.0386.84342forward
CNT30129081Arabidopsis lyrataCorymbia citriodora36.7425.5881.2133forward
CNT30479816Arabidopsis lyrataArabidopsis halleri94.4840.4395.91342forward
CNT30704154Arabidopsis lyrataPrunus avium37.8517.2381.75137forward

Expression of CNT3060034

Peptides detected in this lncRNA

>peptide 1 (54 aa)
TRQTQTILSSFPRRQWRCLRVFESGYHATVSFPFHKTWLGNGLKLSHLFGSEFH*

>peptide 2 (53 aa)
MLLYLSPFTKPGWAMASSSVISSGVSFTDKAPMFWLRFSILVVPGMGQTSSPW*

>peptide 3 (37 aa)
MQGLVVRECTLSSPTLQKLSQRESCCELSFPVGILVES

Sequence

>CNT3060034
ACCAGACAAACTCAGACGATTTTAAGCAGCTTTCCAAGAAGACAATGGCGGTGTCTCAGAGTTTTTGAAAGTGGGTATCATGCTACTGTATCTTTCCCCT
TTCACAAAACCTGGTTGGGCAATGGCCTCAAGCTCAGTCATCTCTTCGGGAGTGAGTTTCACTGATAAAGCTCCAATGTTCTGGTTGAGGTTTTCAATCT
TAGTGGTTCCTGGGATGGGGCAAACATCATCTCCCTGGTGATGAACCCATGCAAGGGCTAGTTGTGCGGGAGTGCACCCTTTCTTCTCCGACATTGCAGA
AACTTTCTCAAAGAGAATCTTGTTGTGAACTAAGTTTTCCTGTTGGAATCTTGGTAGAGTCT