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Detailed information on CNT3060029


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QL44|CLPP_DRANE, E-value = 6e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30268958Arabidopsis lyrataChenopodium quinoa28.9952.2389.66387forward
CNT30200024Arabidopsis lyrataPisum sativum12.7324.5781.76170forward
CNT30504293Arabidopsis lyrataNicotiana attenuata23.2212.2791.29310forward
CNT3045660Arabidopsis lyrataPrunus dulcis17.2354.8990230forward
CNT30588249Arabidopsis lyrataMusa acuminata17.6850.9780.08236forward
CNT30173048Arabidopsis lyrataTrifolium pratense7.7226.2182.52103forward
CNT3083483Arabidopsis lyrataBrassica juncea32.13100.795.8429forward
CNT30598582Arabidopsis lyrataFraxinus excelsior19.6379.8891.6262forward
CNT30607170Arabidopsis lyrataGossypium raimondii28.5452.786.61381forward
CNT30218200Arabidopsis lyrataKalanchoe fedtschenkoi32.6638.7688.53436forward
CNT30655370Arabidopsis lyrataRosa chinensis28.9132.9989.64386forward
CNT30154187Arabidopsis lyrataPrunus persica28.9146.9690.67386forward
CNT3057113Arabidopsis lyrataAmborella trichopoda20.759.6483.39277forward

Expression of CNT3060029

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MIQQSQSVFFFFLYGVKTKFVTLKCARIGKISFEKPLPYLILLFQYIIEFFFNLKNFILNSKCHAIIT*

Sequence

>CNT3060029
CCCTGATGATATAATAGAAAAGGTTTTTCTATTTCGCAGAATGAGACGGGATAACCAAAACAAAAAAAAAACAGATAAAATTGATTAACCGTACAGGCTT
TTTTTGTGCATTGCATACGGCTCCACATTGGAATTGACTTTTTTGACCTTTCCTTTTGGCGAAAGAAAACAAAATATAGGTTGTATTATACGCAGATCCA
GAAATCATCCAATTACCATCCTTCTTTTTTTTGTAGGAGTTAAAAAAATACTATGATGGTTCCGTTGCTTTATATATCATTTTTTTGATTCGTCTATGAT
TCAGCAATCCCAAAGTGTCTTTTTTTTTTTTTTGTACGGTGTGAAAACAAAGTTTGTGACGCTGAAATGTGCCCGAATAGGTAAGATATCATTTGAAAAA
CCTCTTCCTTATCTCATACTACTCTTTCAATATATAATCGAATTTTTTTTTAATCTAAAAAATTTCATATTGAATTCGAAGTGCCATGCTATTATTACTT
AACTAATTCATATTTACGATGGCGAAGGCATAGTATTTTTTTCTCGAAAAGAAAAACTCATTGGCGCCAAGCGTGAGGGAATGCTATACGTTTGGTAATT
GCTCCTCCGACCAGGATAAAGGATGCTATTGAAGCGGCCAATCCCATGCATATTGTCTGTACATCGGGTCGCACAAATTGCATAGTATCATAAATAGCCA
TTCCAGATATTACCCATCCACCAGGAGAGTTTATAAACAAATAAAGATCTTTGGTATCCTTTTCTATACTGAGATATATCATAAGACTAATAAGTTGATT
CGAGATTTCGGTATCAACCTCTTGGCCTAAAAAAAATAATCTTTCTCGATAAAGTCGGTTGTATATGTCAACCCAAGATGTATCTCCTTCTCCAGGACTT
CGAAAAGGTACTTTTGGAACGCCAATAGGCATGAAATGAAAAAAAAGAGAATGAAGTTCTCTATTTCACTTTGATGTGGAAACGTAAAATTGGGGTTTCG
GTTTTTAATACTATTATCCTTTTTTCCTACTTTATTAATCATATTTAAATTAATGATATTTAATACATAAGTTGAATAAGCTAAAATAAAATATAAAATA
AAAGTAAAGTAAGAGAGAATGAATAAAACTAAAGGAAATTTTTTACGAACGGGCTTCTGAATGATCAACAATAATAGCTATCTTGGTTCATATAAAATAG
GATTCACCCCCATTGCATATTGGTACTTATCGGATATAGAATAGATCCGCTTCCCTTTTTTCTATGAATTGTTCCATTATTACTAACAGAATAGAACAAA
TATTAATCCTTTCTCCGAAATAATTACCTAAAAAG