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Detailed information on CNT3060017


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549116Arabidopsis lyrataIpomoea triloba11.0731.3484.2789reverse complement
CNT30435838Arabidopsis lyrataAegilops tauschii8.2126.5186.3666reverse complement
CNT30680173Arabidopsis lyrataTriticum urartu8.2127.1686.3666reverse complement
CNT30365858Arabidopsis lyrataSorghum bicolor10.3222.9384.3483reverse complement
CNT3065055Arabidopsis lyrataSelaginella moellendorffii11.9426.0283.3396reverse complement

Expression of CNT3060017

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MFRNFKTIFLFIFMCKTILLVIKIISIFIIDFYFRFRVYFIYKNILYL*

>peptide 2 (33 aa)
MSFFCLQNLDSLTSCPFLPCSFTCNGLTNHICK*

Sequence

>CNT3060017
GGATCTGTAGTTGCCGCTCTGTAGCTGTTCAGTACAAGAACTACAAGGTATTTACGGCTTTGTAGCTGTTCAATTAAAGATGAGTTATGTTGTAATGATT
CTGATAATCCATGTCGTTCTTTTGTTTGCAGAATCTTGATTCCTTAACTTCTTGTCCGTTCCTACCTTGTTCTTTTACTTGTAACGGTCTGACAAATCAC
ATATGCAAATGATAAGAGTACATATGTATATGCCTTTTTTACTGCAATCAGGTGGAGAGATGAGACCATAAAGCTATATAATCTTTGACAAAATTGAGAT
TAGTTTTAGCTTCTTTGCGTGAACTCATTCCATTTGTATATGATTCAAGAGAGATAAAGAAGATAAAGCAACAAGTGAAGTGGTCTTGGAGCTGAGATCA
TTGGCACATTCGTCCTTGTATACACAGTCTTCTCAGCAACTGACGCCAAGAGAAACGCCTGTGACTCTCATGTCCCCTTGACAGAGGACAGTGATTGATG
ATTCTTTGACAGCTAGTTCCAAAATCGTTTCAAAATCATCACATGCACAGACAAAGGCAAAGACACCACCAGAGACCTATGTATCACAATTAGGTTTATT
ATGTTTAGAAACTTTAAGACAATTTTTTTGTTTATTTTCATGTGTAAGACTATTTTGTTGGTAATTAAAATAATTTCTATTTTCATTATAGATTTTTATT
TTCGATTTAGAGTTTATTTTATTTATAAAAATATACTGTATTTATAAAAAATAACGTATTTATAAAAAAAATACGGATTTATAAATGAACACTTTGTGTT
TTCT