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Detailed information on CNT30600040


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381087Fraxinus excelsiorManihot esculenta21.2824.2985.47179reverse complement
CNT30489557Fraxinus excelsiorOlea europaea44.8374.9587377forward
CNT3094238Fraxinus excelsiorSolanum tuberosum13.6726.2686.96115reverse complement
CNT30608750Fraxinus excelsiorGossypium raimondii13.7945.3186.21116reverse complement

Expression of CNT30600040

Peptides detected in this lncRNA

>peptide 1 (42 aa)
PLNQLEITATFTANPTFYIFVHMNLPPTIICSHFTVNSSSLF*

>peptide 2 (72 aa)
ATQPIRNHSHIYGQPNFLYIRTYESPTYHHLFTLHSKFFFSFLKKKLDFASFFVIFTENVLDFCFFEEVDFK*

>peptide 3 (74 aa)
MMLRFKRVPTVVSNFQKEEVEEDSRHAGGCGRNCFRSCCLPGAKLPMYAFKKMNKIEVEKKSAGSENKEPPVPFL

Sequence

>CNT30600040
GCCACTCAACCAATTAGAAATCACAGCCACATTTACGGCCAACCCAACTTTCTATATATTCGTACATATGAATCTCCCACCTACCATCATCTGTTCACAC
TTCACAGTAAATTCTTCTTCTCTTTTTTGAAAAAAAAGTTGGATTTCGCATCCTTTTTCGTCATTTTTACAGAAAACGTTCTGGATTTTTGTTTTTTTGA
AGAGGTAGATTTCAAGTGAGGTCGCCGGCGATTCTGCGACGGTTTTGAGAGGCGTTTAAGGTGGGGTAAAACCCGGGGAAGACAAGTTGTAGACAACACG
GCTATACTTAGAGTAAATCGGTCTGTAAAACATGTCCGGTCTGTACGTCGTAAGGGTTGTGTAATTGGCAGCAACCATTTGCCGCACGGCGGACGTGGCG
CTTTGCCTTCTGAAGGCGGTAGTCCTTCTGACCTCCTCTTCCTCGCCGGCGGCGGTTTATACTATTAGCTTCCCGCTTCTGTAAATATTGTAGAATTATA
TTATACGGTTTGATTATTGCCTAAATTGATAAGAATTTGGGAATTTTGGGATTGGGGTTGGTGGATCTTCTCTGCAATTGCTGAAAAAAAGTATATACAT
TAAGAGATCTAAAGATGATGCTAAGGTTCAAGAGAGTTCCTACTGTTGTTTCCAATTTCCAAAAGGAAGAGGTGGAGGAAGACTCGCGCCATGCCGGCGG
CTGCGGCCGCAATTGCTTCAGAAGCTGCTGTCTTCCAGGGGCAAAGCTGCCTATGTATGCTTTCAAGAAGATGAACAAGATTGAAGTTGAAAAGAAATCA
GCCGGCTCTGAAAACAAAGAGCCTCCGGTTCCATTCTTGGG