« Back to Arabidopsis lyrata search


Detailed information on CNT3059977


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597766Arabidopsis lyrataFraxinus excelsior12.7322.9386.49111forward

Expression of CNT3059977

Peptides detected in this lncRNA

>peptide 1 (37 aa)
IRINFYSLGAVQAPFGAYGSTKIVKKSMCRFQPPLFS*

>peptide 2 (31 aa)
MNQIPRLFLLLLLFFFNSFLSHVFCQIVKKF*

Sequence

>CNT3059977
ATTAGGATAAATTTTTATTCCTTAGGAGCCGTACAGGCACCTTTTGGTGCATACGGTTCAACAAAAATTGTGAAAAAATCAATGTGTCGATTCCAACCTC
CCCTTTTTTCATAGAGGGTTTTTCTTTCTAACTTATAACGGAAGGGCTTGCTCCCAAAAGTAAAAGAAAATTTTAGTTTTGGTGCCTTGTACCTTGTATT
AGATATTATAATCCTCTAATAAAACGATTGATTAACCCTGTCAGACTCATTTGATTCATTGATATTTTTTTTTCATCGAGATTCAGTTGAAATGGCGATG
GTTTTTTCTTGTTCCTGAACGGGCTTCTTCCTTTTTTTATTCCATTTTTTAGGTTTATGCTCTACCCCGAGTAAAAGGAAAAATTTGCCCGATTTTGATT
TGCACATATAGGACAAATGAACCAAATACCGCGTCTTTTTTTACTACTCCTTCTTTTTTTTTTCAATTCATTTCTTTCACATGTCTTCTGTCAAATAGTC
AAAAAATTTTGAATTATATTATTTGATTTGAGCAACAGTTTTAGATCGCCCTGTTTCAATTTTTTTTATAGAATTTTTATCATAATTTTACATATCATAT
AAGTAGTAATTATAAAAATATTATATATTAATTATCAATTGGGTTTTTGCTAAACGGAGCCTGGATACTTCATTTTATTAGTCCGATCACGTAAACCATA
AAAAAATTTTGATAATCTAATATCAATTTAAATACTCCCTGCATTTAATTCCACTTTATTTTTTGCGCTTCGCGTTACAAATTTTTGAAAATTCAATCAA
TCTTTTTGAGCGAAACAGAGGATATCTCGATCGAGGGAGAAAATGGGGAAATCCCATATAGCCCGATATATC