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Detailed information on CNT30599410


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08451|PIP1_SOLLC, E-value = 7e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549116Fraxinus excelsiorIpomoea triloba12.8229.9390.5985forward
CNT3019525Fraxinus excelsiorCitrullus lanatus9.829.6890.7765forward
CNT30728842Fraxinus excelsiorCorchorus capsularis13.4225.6585.3989forward
CNT30712585Fraxinus excelsiorGlycine max9.0525.649060forward
CNT30163276Fraxinus excelsiorPistacia vera14.3330.8483.1695forward
CNT30394052Fraxinus excelsiorTriticum turgidum2712.5179.89179forward
CNT30435838Fraxinus excelsiorAegilops tauschii12.0732.1383.7580forward
CNT30623024Fraxinus excelsiorDaucus carota15.5430.9385.44103forward
CNT30680173Fraxinus excelsiorTriticum urartu12.0732.9283.7580forward
CNT30644102Fraxinus excelsiorCannabis sativa13.8821.1590.2292forward
CNT3024497Fraxinus excelsiorPopulus trichocarpa9.823.1389.2365forward
CNT30319296Fraxinus excelsiorAsparagus officinalis13.4220.0986.5289forward
CNT30120512Fraxinus excelsiorCitrus clementina12.9728.7687.2186forward
CNT3065055Fraxinus excelsiorSelaginella moellendorffii14.4826.0288.5496forward

Expression of CNT30599410

Peptides detected in this lncRNA

>peptide 1 (29 aa)
KLRESAKTYLRTTTYMNKMKIITNFPGIS*

Sequence

>CNT30599410
AAGCTGCGAGAAAGCGCAAAGACATATTTAAGAACTACTACATACATGAATAAGATGAAAATCATTACGAACTTTCCCGGGATCAGCTAAGCGAGTACAT
TGAATATTCCGGCATTATCTTACTCCCAAAGGAGTACTAACAACACTACAAGGATTTTTGGAAATTATTTTTGAGAATTGAGTGCGTAAACTTTCGAACG
GTTTTGGTACACTCGTTCCTATGTTCCAAAGCAAATAGATCCTAGCAACTACAACAGGCTAAATAATAATCAAATTCGTCAAAACACTAATGTTAAATCG
TAGGGGCTAAGTTCAAGTCTCATCCTTCACAAAAATCGTGCATATGACAGTCTTCTAAATTCAAATCAATCCCCTCAACTTAAGCTTTTGCAGCAACATC
CAAAATAAAAAAGGGTTAGTGAGCCATAACGGTCAAGTTAATTGAAGTAATTCGCAGAGAATAGGGTAATCATACCGGGACGTGCGAGTCTCTGGCATTT
CTCTTGGCATCAGTAGCCGAGAAGACAGTGTAGACGAGAACAAAGGTGCCAATAATCTCCGCACCAAGGCACTGCATCACCATGTAAAATACAGCCCTGG
TCAAAGAAAGTTTCCTTGCCAAGAACAAGCCAAAGGTCACAGCTGGGTTGATGTGCCCTCCTG