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Detailed information on CNT3059930


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30202037Arabidopsis lyrataPisum sativum83.788.5789.96279forward
CNT30289362Arabidopsis lyrataTriticum aestivum80.7823.8989.96269forward
CNT30219816Arabidopsis lyrataHordeum vulgare63.6610.6491.51212forward
CNT301761Arabidopsis lyrataZea mays24.021.4192.580forward
CNT30683954Arabidopsis lyrataTriticum urartu80.789.6389.96269forward
CNT30430934Arabidopsis lyrataPapaver somniferum83.784.2791.76279forward
CNT3057356Arabidopsis lyrataAmborella trichopoda83.7811.688.53279forward
CNT30147977Arabidopsis lyrataBrachypodium distachyon53.7514.6193.85179forward
CNT30585620Arabidopsis lyrataEchinochloa crusgalli80.785.2488.48269forward
CNT30496729Arabidopsis lyrataDigitaria exilis80.7826.4589.59269forward

Expression of CNT3059930

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLGHLSKIKVHQIHMKFSHERIVSIGQIWVRSRFVFREYQKQA*

>peptide 2 (38 aa)
MSGLYPLGKYGFDQDLFFGSTKSKHDVIMNIKSQSMEP*

Sequence

>CNT3059930
CCCTGCCATAATGTGATGTGTTTCCAATGCCAATAAAAAGTAACCCATCCAATAGTATTTAACCAGCCAGGCAACCATATGCTTCGACCCGCATTAAATG
CTGGGCCACTTGTCGAAGATAAAAGTACATCAAATCCATATGAAGTTTTCCCATGAGCGGATTGTATCCATTGGGCAAATATGGGTTCGATCAAGATTTG
TTTTTCGGGAGTACCAAAAGCAAGCATGACGTCATTATGAACATAAAGTCCCAAAGTATGGAACCCTAGAAAGAGGCTGGCCCAACTTAAATGGGATATG
ATAGCTTCTTTATGGTCTAACATTCTTGCTAAT