« Back to Fraxinus excelsior search


Detailed information on CNT30599194


BLAST search results

BLAST vs Swiss-Prot:
sp|P31333|RBS_GOSHI, E-value = 1e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402284Fraxinus excelsiorBeta vulgaris9.2226.9491.5359forward
CNT30490773Fraxinus excelsiorOlea europaea14.6922.9893.6294forward

Expression of CNT30599194

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MIERKLQTKGDILLISFWLFSNETNALHLTHVVESNDPNKGKESISIGEDNRLP*

>peptide 2 (30 aa)
MILTKARNPFRSEKIIDFLEELFPSEIWKV*

>peptide 3 (29 aa)
MQDTLPPLLAMDVMSSFLRLTGKAEVDLRP

Sequence

>CNT30599194
GGAGATGTTTATTTATTTATATTTTATAATATGGATATTGAATTGCTAAAAAAATTTAACAACAAAAATGGGACATTATAATTAATTAATATCCTCATAT
ATATGTTCCATCGGAGATTCGGCGAATGAGAAAGGAAATACAAATTAACACAAAAAGTTGTACATGATAGAAAGAAAATTACAGACTAAAGGAGACATTT
TATTAATATCCTTCTGGCTTTTTAGCAATGAAACTAATGCATTGCACTTGACGCACGTTGTCGAATCCAATGATCCTAACAAAGGCAAGGAATCCATTTC
GATCGGAGAAGATAATCGACTTCCTTGAGGAGTTGTTCCCTAGTGAGATCTGGAAGGTATGAAAGAGTCTCATACTTCTTCAAACCAGTTGGTGGCCACA
CCTGCAGATCAACCACCCACATATTGCAAAATATAATGATATTCTTTAATATCTAATCTCAAATCATATTAATCCTACTTACTTACTCATACAATTATCC
AAATAGAAACTCTTTTCTTGAGTTAAATTAGTGAATTGAGTGTACCTTCATGCAAGACACCCTACCACCATTGCTAGCAATGGATGTGATGTCATCATTC
TTGCGGCTAACGGGGAAAGCCGAAGTCGATTTGAGGCCGG