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Detailed information on CNT3059907


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692810Arabidopsis lyrataOryza sativa41.8516.8590.61213forward
CNT30530127Arabidopsis lyrataEucalyptus grandis31.8350.7891.36162forward
CNT30378684Arabidopsis lyrataArabidopsis thaliana43.0321.5697.72219forward
CNT30300827Arabidopsis lyrataTriticum aestivum40.4718.1289.32206forward
CNT3089382Arabidopsis lyrataVigna radiata41.0645.8389209forward
CNT30540534Arabidopsis lyrataBrassica napus43.0319.0898.63219forward
CNT30145113Arabidopsis lyrataMedicago truncatula42.2465.5593.49215forward
CNT30441777Arabidopsis lyrataAegilops tauschii40.4736.5988.83206forward
CNT30263944Arabidopsis lyrataBrassica rapa57.761294.9294forward
CNT3018289Arabidopsis lyrataZea mays41.858.2191.55213forward
CNT30606924Arabidopsis lyrataGossypium raimondii26.7216.6392.65136forward
CNT3067750Arabidopsis lyrataLeersia perrieri36.1568.9189.13184forward
CNT30655381Arabidopsis lyrataRosa chinensis30.6529.1691.67156forward
CNT30627896Arabidopsis lyrataDaucus carota43.221593.64220forward
CNT30684652Arabidopsis lyrataTriticum urartu40.4726.6589.32206forward
CNT30484609Arabidopsis lyrataChara braunii23.3830.2882.35119forward
CNT3058324Arabidopsis lyrataAmborella trichopoda41.8530.8786.85213forward
CNT30147990Arabidopsis lyrataBrachypodium distachyon40.4713.6188.35206forward
CNT30117690Arabidopsis lyrataOryza nivara18.2728.9791.493forward
CNT3049694Arabidopsis lyrataCucumis sativus11.9820.5498.3661forward

Expression of CNT3059907

Peptides detected in this lncRNA

>peptide 1 (57 aa)
LPDRVKMQTNSCRSRNNGTGNNIVSVKKRSRNRFTNTINIYWRSSNECDNKNGSCGQ*

Sequence

>CNT3059907
CTTCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGT
TCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAACAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACC
ATCCAATGTAAAGACGGCTTTCGCTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAAATCCTTGGTTTATTTAATCATCAGGGACTCCCAAGCGCACAA
ATTCTCTAAAACTATAAGTAGATAATTGAGAGCTTGTTATTGAACAGTATAACATGACTTATATAGCCATGTCAACCAATGTAAAATGGATAAGATCCTT
TTAGTTTAGATTCATAATAATTTTTTTTTTTGATGAAATAAATTAGAAGCGAATCCACATACATAGAAATAGAATTACTCTATGAATATTATTTCCAAAT
CATATGAAT