Detailed information on CNT3059902


BLAST search results

BLAST vs Swiss-Prot:
sp|P20364|TBB1_DAUCA, E-value = 7e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674723Arabidopsis lyrataSetaria viridis75.3219.7581.03174forward
CNT30516889Arabidopsis lyrataJuglans regia68.8326.2883.65159forward
CNT30209019Arabidopsis lyrataHelianthus annuus21.655.999050forward
CNT3054454Arabidopsis lyrataAmborella trichopoda37.2315.3686.0586forward
CNT30116105Arabidopsis lyrataOryza nivara55.4117.3482.81128forward

Expression of CNT3059902

Peptides detected in this lncRNA

>peptide 1 (43 aa)
SGSILVLLVFSHQRSLRAGGLRELHYTVQRQCLRPLEMGKQRM*

Sequence

>CNT3059902
CAGCGGTAGCATCTTGGTATTGCTGGTATTCAGCCACCAGCGTTCTCTACGAGCTGGTGGACTGAGAGAGTTGCATTATACGGTTCAACGACAGTGTCTG
AGACCTTTGGAGATGGGAAAACAGAGAATGTGAGCATCATCCTGTCTGGATACTCCTCACGGATCTTTGATATCAAGAGAGTTCCCATTCCAGAACCTGT
GCCTCCTCCAAGAGAGTGACATACTTGAAAC