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Detailed information on CNT30598585


BLAST search results

BLAST vs Swiss-Prot:
sp|B1A921|ATPF_CARPA, E-value = 2e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Fraxinus excelsiorOryza sativa60.739.1687.07518forward
CNT30678565Fraxinus excelsiorSetaria viridis22.0420.4889.89188forward
CNT30535895Fraxinus excelsiorEucalyptus grandis19.2329.693.9164forward
CNT30703171Fraxinus excelsiorQuercus lobata61.24.3890.8522forward
CNT30617713Fraxinus excelsiorSesamum indicum31.6513.7891.11270forward
CNT30282912Fraxinus excelsiorChenopodium quinoa62.4949.7291.37533forward
CNT3020344Fraxinus excelsiorCitrullus lanatus22.989.6888.27196forward
CNT30632292Fraxinus excelsiorVigna unguiculata41.2711.7385.8352forward
CNT30505351Fraxinus excelsiorNicotiana attenuata61.3115.0594.26523forward
CNT30160646Fraxinus excelsiorPistacia vera6.6824.6887.7257reverse complement
CNT3095993Fraxinus excelsiorSolanum tuberosum41.628.8790.99355forward
CNT30179302Fraxinus excelsiorSecale cereale19.4625.7889.76166forward
CNT30291829Fraxinus excelsiorTriticum aestivum60.7313.1486.1518forward
CNT30222903Fraxinus excelsiorHordeum vulgare18.0554.0487.66154forward
CNT3086153Fraxinus excelsiorVigna radiata1765.6186.9145reverse complement
CNT30541474Fraxinus excelsiorBrassica napus60.1416.7787.72513forward
CNT30511193Fraxinus excelsiorSolanum lycopersicum53.1125.5687.86453forward
CNT30554216Fraxinus excelsiorOryza glaberrima58.576.5386.97499forward
CNT30145240Fraxinus excelsiorMedicago truncatula20.1630.9493.02172forward
CNT30660677Fraxinus excelsiorTriticum dicoccoides60.7338.8385.91518forward
CNT3017990Fraxinus excelsiorZea mays60.7315.6586.49518forward
CNT30205079Fraxinus excelsiorHelianthus annuus65.5377.3292.49559forward
CNT30689283Fraxinus excelsiorTriticum urartu40.6813.6885.3347forward
CNT30621081Fraxinus excelsiorCajanus cajan59.248.3789.7505forward
CNT30409854Fraxinus excelsiorPapaver somniferum60.9678.4391.54520forward
CNT3057337Fraxinus excelsiorAmborella trichopoda23.925.4787.75204forward
CNT30121210Fraxinus excelsiorCitrus clementina62.1313.6191.89530forward
CNT30551824Fraxinus excelsiorOryza brachyantha19.8169.2683.43169forward

Expression of CNT30598585

Peptides detected in this lncRNA

>peptide 1 (29 aa)
VNVTRCSNNYSEFLKLLVRLVGKPVVGLD*

Sequence

>CNT30598585
CGTAAATGTAACTCGTTGTTCAAACAACTATTCAGAGTTCCTAAAGCTCCTTGTAAGGCTTGTTGGAAAACCCGTTGTCGGACTTGATTAATCGCCCTTT
GCTGTTCAAACTGAATTGTTTCATTTTTGTAATTTTCTAATTGTTCCAAAGTCTTAGAAGTTGAATTAATCAAATTCCATTTTTCTCGCTCTATCTCAGA
GTATCCATTCACCCGAAACTGATCTGCTTCCATTTCCACTTTCCGTAAGCGAGCCCGGGCTTTTTCCAGCTGTTCAACGGCCCCCCCACGCAGTTCTTCT
GAATTTCGAATAGTATTCAAGATCCTCTGTTTTCGATTATCTAATAAATCACTTAACACTCCCTTTCCAAAAAAGATCAATACACCAATCACTACACTTA
GATTTATTGGATTTGTTGCTAAAATATCGGTATTAAATCCGAAACTCCCGGCAGATGGCCAGTGGCCCAAAGAAACGAAAGAATCGGTTACATTTTTCAT
AGGATCTCCTCTTATAGATAGACTCAAAAATCGATCAGAGTTCTTTTTGTATCACTTTGCCTATTTATTCTTTTTTTTTTTTTATCGAGTCAAAAAATAT
TCGAGTTCTAAAGTATGAACTACCCCCTTGCTGTTGCAACACCTCCTAAAAAGAGTTTCCCTTGGACTACGAACGGGAAAGGATGAAAGCAAGTCGGTAT
GCTAATTCCTCATCTGCAAATCAGCCCTTCCCGTAGGGTATTTTCTCAACGAATAAGTAATTGTAGGAGTTAAATCTTGATATAATTTGAAAAAGCAAAC
AAGAGGTCCAAGGCAATAAAATATGAAAAATATGTATTTTTCATATTTCTAAG