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Detailed information on CNT30598581


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3V554|PSBA_ACOCL, E-value = 2e-56

BLAST vs NONCODE:
NONCQUT000002, E-value = 2e-97

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692810Fraxinus excelsiorOryza sativa84.1423.584.51297forward
CNT30378687Fraxinus excelsiorArabidopsis thaliana77.925.6192.36275forward
CNT3021444Fraxinus excelsiorCitrullus lanatus23.2319.6690.2482reverse complement
CNT30196112Fraxinus excelsiorPisum sativum84.1464.1585.86297forward
CNT30489969Fraxinus excelsiorOlea europaea32.295.8192.98114forward
CNT30300480Fraxinus excelsiorTriticum aestivum83.2922.4484.69294forward
CNT30391503Fraxinus excelsiorTriticum turgidum75.3553.286.09266forward
CNT3089384Fraxinus excelsiorVigna radiata34.5615.0291.8122forward
CNT30540528Fraxinus excelsiorBrassica napus83.8524.6585.81296forward
CNT30555706Fraxinus excelsiorOryza glaberrima34.2817.6693.39121forward
CNT30145435Fraxinus excelsiorMedicago truncatula34.8433.9896.75123forward
CNT3018289Fraxinus excelsiorZea mays74.510.1385.55263forward
CNT30605440Fraxinus excelsiorGossypium raimondii84.773.1188.29299forward
CNT30627896Fraxinus excelsiorDaucus carota84.9920.4595300forward
CNT30685586Fraxinus excelsiorTriticum urartu78.1950.4692.39276forward
CNT30360309Fraxinus excelsiorLactuca sativa78.7548.3597.48278forward
CNT3058320Fraxinus excelsiorAmborella trichopoda91.546.4783.59323forward
CNT30102095Fraxinus excelsiorOryza rufipogon34.2851.7193.39121forward
CNT30117629Fraxinus excelsiorOryza nivara23.822.490.4884forward

Expression of CNT30598581

Peptides detected in this lncRNA

>peptide 1 (29 aa)
LFYQEGIIAPLFSFFFNNSYTLRSGLIHL*

>peptide 2 (42 aa)
MSITFMHNFHTKVSTVNDISPSINYTALTINYGLVESHSADT*

Sequence

>CNT30598581
TCTTGTTCTATCAAGAGGGCATTATTGCTCCTTTATTTTCTTTTTTTTTCAATAACTCCTATACACTAAGATCGGGTCTTATCCATTTGTAGATGGAGCT
TCGATAGAAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATGATATCAGCCCAAGTATTAA
TTACACGGCCTTGACTATCAACTACGGATTGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAA
GAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATTAATCGGC