« Back to Fraxinus excelsior search


Detailed information on CNT30598237


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693436Fraxinus excelsiorOryza sativa37.724.4381.9232forward
CNT30641762Fraxinus excelsiorNymphaea colorata36.266.4282.06223forward
CNT30405603Fraxinus excelsiorBeta vulgaris36.2629.1984.3223forward
CNT3048584Fraxinus excelsiorPrunus dulcis29.5956.5282.97182forward
CNT30637715Fraxinus excelsiorCapsicum annuum13.3325.9586.5982reverse complement
CNT30185636Fraxinus excelsiorSecale cereale21.638.5884.96133forward
CNT30294378Fraxinus excelsiorTriticum aestivum21.636.5285.71133forward
CNT30540371Fraxinus excelsiorBrassica napus2020.3685.37123forward
CNT30555950Fraxinus excelsiorOryza glaberrima36.114.6581.98222forward
CNT30442098Fraxinus excelsiorAegilops tauschii21.6320.0985.71133forward
CNT30243771Fraxinus excelsiorAvena sativa20.3310.8486.4125forward
CNT30656274Fraxinus excelsiorTriticum dicoccoides21.6326.7184.96133forward
CNT30311863Fraxinus excelsiorCamelina sativa36.2613.6681.61223forward
CNT3060130Fraxinus excelsiorArabidopsis lyrata36.2624.3282.06223forward
CNT3083474Fraxinus excelsiorBrassica juncea203.6885.37123forward
CNT30447455Fraxinus excelsiorSaccharum spontaneum34.829.8181.31214forward
CNT30134355Fraxinus excelsiorLolium perenne21.635.2886.47133forward
CNT30655378Fraxinus excelsiorRosa chinensis36.2615.0282.96223forward
CNT30717952Fraxinus excelsiorMalus domestica golden14.1524.2383.9187forward
CNT30685951Fraxinus excelsiorTriticum urartu21.639.0186.47133forward
CNT30620547Fraxinus excelsiorCajanus cajan25.6950.3282.91158forward
CNT30357951Fraxinus excelsiorLactuca sativa36.2623.784.75223forward
CNT30411335Fraxinus excelsiorPapaver somniferum34.824.882.71214forward
CNT30574575Fraxinus excelsiorVitis vinifera36.2614.6184.3223forward
CNT30585636Fraxinus excelsiorEchinochloa crusgalli38.544.1382.7237forward
CNT30604550Fraxinus excelsiorOryza punctata21.796.1282.09134forward
CNT30557814Fraxinus excelsiorPanicum hallii20.3312.0982.4125forward
CNT30550799Fraxinus excelsiorOryza brachyantha21.639.8783.46133forward
CNT30336888Fraxinus excelsiorCynara cardunculus37.897.2985.84233forward
CNT30724130Fraxinus excelsiorLupinus angustifolius13.0123.958580forward

Expression of CNT30598237

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MITSIKYSLCSASILFTKSSSFGIIIDGCFSG*

>peptide 2 (44 aa)
ILFNFNPLQPFNRCCCLVRFQFCCWLLPLLLVCHRQSSKAPPPV*

>peptide 3 (54 aa)
SFQFQPPATVQPLLLPGTIPILLLAAPVAARLPPPVLQGSTTRLTPLHSSKFKP*

>peptide 4 (59 aa)
MDLDFSTTMCISCHCSSNCFDLSRCDPSKFKCLKSIFIQTHDYLDKIFPLFCIHIVYEI*

>peptide 5 (85 aa)
FFSISTPCNRSTAVAAWYDSNSAAGCSRCCSSATASPPRLHHPSNTASFFKVQTLAQRSVKVLLCCFSSGPPISLSGFSKYICYL*

Sequence

>CNT30598237
ATTCTTTTCAATTTCAACCCCCTGCAACCGTTCAACCGCTGTTGCTGCCTGGTACGATTCCAATTCTGCTGCTGGCTGCTCCCGTTGCTGCTCGTCTGCC
ACCGCCAGTCCTCCAAGGCTCCACCACCCGTCTAACACCGCTTCATTCTTCAAAGTTCAAACCCTAGCCCAAAGGTCAGTAAAAGTTTTGCTTTGTTGCT
TCTCGTCCGGACCTCCTATCTCATTATCTGGATTTTCGAAATATATTTGTTACTTGTGATTTGGAGTTATATTTTGAGAATTTAATCAAAAATTTAAAAT
AGGGTAATTAGTCTGTAACCAGTTTGTCGGGAAATATATGGACCTAGATTTTTCCACCACGATGTGCATTTCGTGTCATTGCTCATCCAACTGCTTCGAT
TTGTCTAGATGTGATCCAAGCAAGTTCAAGTGCTTGAAGAGCATATTTATCCAAACACATGATTACCTCGATAAAATATTCCCTTTGTTCTGCATCCATA
TTGTTTACGAAATCTAGTTCTTTTGGGATTATAATTGATGGTTGTTTCAGTGGTTGATAAACTGAAGTGACAATTTAGACTGGCACTATGAAATCCATTC
TTTGTGTGATTATCG