Detailed information on CNT3059817


BLAST search results

BLAST vs Swiss-Prot:
sp|A4QLU1|RBL_NASOF, E-value = 9e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678279Arabidopsis lyrataSetaria viridis86.4858.1685.57499forward
CNT30508892Arabidopsis lyrataSolanum lycopersicum20.282.4186.32117reverse complement
CNT30444216Arabidopsis lyrataAegilops tauschii61.0169.785.51352forward
CNT30265852Arabidopsis lyrataBrassica rapa17.8523.5794.17103forward
CNT30477828Arabidopsis lyrataArabidopsis halleri70.3679.7698.28406forward
CNT30578317Arabidopsis lyrataOryza barthii67.2480.1786.86388forward

Expression of CNT3059817

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MHYDRNSQFSGKYSSFDHFFACTRSSIQIMPFDFTCFSL*

Sequence

>CNT3059817
GGTCAAAGCAGGCATATGCCAAACGTGAATACCCCCTGAAGCCACAGGCAGAACACCTGGTAGTGAGACCCAATCTTGAGTGAAAAAGATACCGCGGCTT
CGATCTTTTTCAACATAATCATCGCGCAGTAAATCAACAAAGCCCAAAGTTGACTCCCTGTCTCCTTCAAGTTTACCTACTACTGTACCCGCGTGAACAT
GATCTCCACCAGATAGACGTAAAGCTTTAGCTAGTACACGGAAGTGCATACCATGATTCTTCTGTCTATCAATAACAGCGTGCATTGCACGGTGGATGTG
AAGAAGTAGTCATGCATTACGATAGGAACTCCCAATTCTCTGGCAAATACAGCTCTTTTGATCATTTCTTCGCATGTACCCGCAGTAGCATTCAAATAAT
GCCCTTTGATTTCACCTGTTTCAGCCTGTGATTTATAAATAGCTTCGGCACAAAATAAGAAACGGTCTCTCCAACGCATAAATGGTTGGGAGTTCACATT
CTCATCATCTTTGGTAAAATCAAGTCCACCACGTAGACATTCATAAACTGCTCTACCATAGTTCTTCGCGGATAACC