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Detailed information on CNT30598015


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 9e-86

BLAST vs NONCODE:
NONMEST004097, E-value = 5e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672978Fraxinus excelsiorSetaria viridis95.4261.6588.73479forward
CNT30618377Fraxinus excelsiorSesamum indicum49.867.0289.6250forward
CNT30194937Fraxinus excelsiorPisum sativum49.624.9290.76249forward
CNT30505987Fraxinus excelsiorNicotiana attenuata47.0171.7388.98236forward
CNT30712097Fraxinus excelsiorGlycine max49.220.788.26247forward
CNT30224987Fraxinus excelsiorHordeum vulgare39.2466.7891.37197forward
CNT30146334Fraxinus excelsiorMedicago truncatula49.625.0591.57249forward
CNT30440472Fraxinus excelsiorAegilops tauschii49.641.8587.55249forward
CNT30614172Fraxinus excelsiorArabis alpina99.850.185.83501forward
CNT3015747Fraxinus excelsiorZea mays10070.3186.65502forward
CNT30368495Fraxinus excelsiorSorghum bicolor5024.6387.65251forward
CNT30426682Fraxinus excelsiorPapaver somniferum5018.9988.84251forward
CNT30148140Fraxinus excelsiorBrachypodium distachyon49.665.5389.56249forward
CNT30101006Fraxinus excelsiorOryza rufipogon4935.3487.4246forward
CNT30579541Fraxinus excelsiorEchinochloa crusgalli97.8185.2488.19491forward

Expression of CNT30598015

Peptides detected in this lncRNA

>peptide 1 (57 aa)
GLVGIILTRPASPFFKNLGSFSISLPERLSILVWSSANLTAMWDVWQSSTGAYPFPI*

>peptide 2 (77 aa)
MMMTWEVKLAAPLAGSSLELEGLVVHLNRLDFSCQTSWAKGDNHTRLDNTSLHTANRYSSNTTNLVDVLKWETEGLV*

>peptide 3 (92 aa)
GLGGNHLNKTSITVLQELGLLLYLLTRTPVNLGLEFSKLNSNVGCVAVEHWCISISNLTRVIHDDDLGSEAGSTLGRVILGVGGPRGASQQT*

Sequence

>CNT30598015
GGGCTTGGTGGGAATCATCTTAACAAGACCAGCATCACCGTTCTTCAAGAACTTGGGCTCCTTCTCTATCTCCTTACCAGAACGCCTGTCAATCTTGGTC
TGGAGTTCAGCAAACTTAACAGCAATGTGGGATGTGTGGCAGTCGAGCACTGGTGCATATCCATTTCCAATCTGACCAGGGTGATTCATGATGATGACCT
GGGAAGTGAAGCTGGCAGCACCCTTGGCAGGGTCATCCTTGGAGTTGGAGGGCCTCGTGGTGCATCTCAACAGACTTGACTTCAGTTGTCAAACCAGTTG
GGCCAAAGGTGACAACCATACCAGGCTTGATAACACCAGTCTCCACACGGCCAACAGGTACAGTTCCAATACCACCAATCTTGTAGACGTCCTGAAGTGG
GAGACGGAGGGGCTTGTCTGAGGGCCTCTTTGGCTCCTGAATCTGGTCAAGAGCTTCGAGGAGGGTTGGGCCCTTGTACCAATCAAGGTTGGTGGACCTC
TC