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Detailed information on CNT3059801


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373331Arabidopsis lyrataArabidopsis thaliana11.2423.3389.849forward
CNT30265330Arabidopsis lyrataBrassica rapa27.7548.5990.08121forward
CNT30478704Arabidopsis lyrataArabidopsis halleri45.8753.4896.5200forward

Expression of CNT3059801

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MALLRKLVSLSPDSAELIFLFPSHPQPFSSASQP

>peptide 2 (74 aa)
MVILRDTLFFETEGRSDVFAGRNDGFLESGGRIVDELTSVSESSNGPQQSEQDEEEKQWLCFVNWYPCLQIQLS*

Sequence

>CNT3059801
TCTAGTAACTTTCATATTTGTATCTAAGGATAACATTTAATCAACATAAATCGGACACTATACTTAGTTCACTAAATTAGTCAAGGCCAATTTAGTTATA
CTCCGTACTATAGAAATCCATCAAGTTATATTCTATACACCAATGCCATTGTGACAAAGAGATGGTAATCTTGAGAGATACCTTGTTCTTTGAGACCGAG
GGCAGATCGGACGTTTTTGCCGGGAGGAATGACGGCTTTCTCGAGTCCGGTGGGAGGATCGTCGACGAATTGACCTCTGTCTCCGAGAGCTCCAATGGCC
CCCAACAAAGTGAACAAGATGAAGAAGAGAAGCAATGGCTCTGCTTCGTAAATTGGTATCCCTGTCTCCAGATTCAGCTGAGCTAATATTCCTTTTCCCA
TCCCATCCTCAACCTTTTTCTTCGGCTTCTCAACCT