« Back to Fraxinus excelsior search


Detailed information on CNT30597766


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30632291Fraxinus excelsiorVigna unguiculata28.3114.5687.59137forward
CNT30504398Fraxinus excelsiorNicotiana attenuata69.6322.1991.69337forward
CNT3090302Fraxinus excelsiorSolanum tuberosum23.5518.0190.35114reverse complement
CNT30559403Fraxinus excelsiorActinidia chinensis28.5127.684.78138reverse complement
CNT3088944Fraxinus excelsiorVigna radiata28.317.8284.67137forward
CNT3059977Fraxinus excelsiorArabidopsis lyrata22.9312.7386.49111forward
CNT30609256Fraxinus excelsiorGossypium raimondii19.2124.4792.4793reverse complement
CNT30203008Fraxinus excelsiorHelianthus annuus67.3629.6192.94326reverse complement
CNT30644762Fraxinus excelsiorCannabis sativa33.4737.8591.98162forward
CNT3057113Fraxinus excelsiorAmborella trichopoda52.488.8486.61254forward
CNT3039143Fraxinus excelsiorCucumis melo60.9526.5390.85295reverse complement

Expression of CNT30597766

Peptides detected in this lncRNA

>peptide 1 (36 aa)
FFFFFNSFHTFHQVFSLRFPRLTNRISLQIPNRNHL*

Sequence

>CNT30597766
TTTTTTTTTTTTTTCAATTCATTTCATACCTTTCACCAAGTATTTAGTTTGAGATTCCCTCGCTTGACAAATAGGATCTCTTTACAAATACCAAACAGGA
ATCATTTATGATACAAGTAGTAATCATAGATATATTATGATACTAATTGGGTTTTTTCTAAACGGAGCCTGGATACTTCATTTTTGAGTCCAACCAAGCC
AACCATAAATTATTCTAATTGATAATAGTAATGTGAATCCCCCAAACAATGGATCTAATTGCGCTTCACGCTCCAAATTTTTGATGATTCAATTTATCTT
TCTTGGGCGAAACAGAGGATATCTCGATCGGGGGAGAGAACGGGGAAATCCCATATGACCCAATATATCTGACAAGTCGCACTATACGTCAACCCAAGAT
GCATCTTCCTCTCCAGGACTTCGGAAAGGTACTTTTGGAACACCAATAGGCATTAATTGAAAGAAAAAAGAACTAAGTACTATA