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Detailed information on CNT3059741


BLAST search results

BLAST vs Swiss-Prot:
sp|P14225|PSAK_CHLRE, E-value = 5e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520562Arabidopsis lyrataSetaria italica53.2937.9579.41170forward
CNT30289849Arabidopsis lyrataTriticum aestivum40.1331.3781.25128forward
CNT30436322Arabidopsis lyrataAegilops tauschii38.2428.8481.15122forward
CNT30242614Arabidopsis lyrataAvena sativa40.1335.8582.03128forward
CNT30659915Arabidopsis lyrataTriticum dicoccoides39.1834.4480.8125forward
CNT30611008Arabidopsis lyrataArabis alpina63.6476.689.66203forward
CNT30102731Arabidopsis lyrataOryza rufipogon40.1326.1282.81128forward
CNT30580757Arabidopsis lyrataEchinochloa crusgalli39.1832.2282.4125forward

Expression of CNT3059741

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MICPTVPQARVSASVNPAGSPVCRPESRASNLSPAVAFLLADGASPNLPANNISVVDVTI

>peptide 2 (33 aa)
SNTNTVSSMLRIYGLWSIKGRKYDTNIKTCKFH*

>peptide 3 (68 aa)
IQHKYRFFHASNLWTMEYKREKIRYKHKDLQIPLDLPQAKDNSNTDDMPNGATSQSIRKREPGRVTRL*

Sequence

>CNT3059741
GATCCAACACAAATACCGTTTCTTCCATGCTTCGAATCTATGGACTATGGAGTATAAAAGGGAGAAAATACGATACAAACATAAAGACTTGCAAATTCCA
TTAGATCTCCCTCAGGCCAAGGACAACTCCAACACCGATGATATGCCCAACGGTGCCACAAGCCAGAGTATCCGCAAGCGTGAACCCGGCCGGGTCACCC
GTCTGTAGACCCGAGTCACGTGCCTCCAACCTAAGTCCAGCTGTCGCCTTCCTATTGGCTGATGGCGCCAGTCCGAATCTCCCCGCGAACAACATCAGCG
TCGTAGATGTTACCATTAT