« Back to Oryza meridionalis search


Detailed information on CNT30597257


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 5e-23

BLAST vs NONCODE:
NONORUT002251, E-value = 5e-111

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Oryza meridionalisSetaria italica31.4613.4888.54157forward
CNT30639598Oryza meridionalisNymphaea colorata27.8623.2882.73139forward
CNT30533654Oryza meridionalisEucalyptus grandis28.0628.5787.86140forward
CNT30549812Oryza meridionalisIpomoea triloba29.0627.282.07145forward
CNT30514302Oryza meridionalisJuglans regia26.4523.1290.15132forward
CNT30275526Oryza meridionalisChenopodium quinoa28.6625.9185.31143forward
CNT30180424Oryza meridionalisSecale cereale30.0623.1892.67150forward
CNT30221624Oryza meridionalisHordeum vulgare30.0622.1292150forward
CNT30386243Oryza meridionalisTriticum turgidum30.0622.1692.67150forward
CNT3084841Oryza meridionalisVigna radiata26.6524.9183.46133forward
CNT30249706Oryza meridionalisAvena sativa30.0623.1594150forward
CNT30467515Oryza meridionalisSaccharum spontaneum30.2620.5291.39151forward
CNT30135597Oryza meridionalisLolium perenne30.0629.0193.33150forward
CNT307034Oryza meridionalisZea mays30.4619.2690.13152forward
CNT30624138Oryza meridionalisDaucus carota28.2626.4585.11141forward
CNT30346089Oryza meridionalisEragrostis tef29.2625.9891.1146forward
CNT30355824Oryza meridionalisLactuca sativa28.6618.3381.12143forward
CNT30371492Oryza meridionalisOryza glumipatula96.3989.5799.38481forward
CNT3053146Oryza meridionalisAmborella trichopoda27.8622.0682.73139forward
CNT30108688Oryza meridionalisOryza longistaminata66.5359.1899.4332forward
CNT30104475Oryza meridionalisOryza rufipogon99.888.6199498forward
CNT30578401Oryza meridionalisOryza barthii99.889.0998.59498forward
CNT30581754Oryza meridionalisEchinochloa crusgalli31.4620.5291.08157forward
CNT30118085Oryza meridionalisOryza nivara99.292.799.39495forward
CNT3065513Oryza meridionalisSelaginella moellendorffii9.4220.793.6247reverse complement

Expression of CNT30597257

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MNEGFLMCLVLTRNRLQSCDSYYVSVLVLFK*

>peptide 2 (48 aa)
MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKEQRPKASENKPVMNE*

Sequence

>CNT30597257
CCAGGGCCGCTCTTATACAGAAAGCAGCATCCCGTGCTTATAATCTCCACCCTTCTACCCCAGTATCCGGACACCCCGTGAAACCCTAGCGACTCTTGCC
CCGGCGGCGGCGGCGGCGGCAGCAAAGGCGAAGATGATCTACGACGTGAACTCCCCTCTCTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCCTCCTCCG
ACAAGAGGAAAATGGAAGAGCAAAAGCCAAAGGAGCAGAGGCCCAAGGCCAGTGAGAACAAGCCTGTGATGAATGAATGAAGGCTTTCTGATGTGTTTGG
TCCTTACAAGGAATAGGCTTCAATCATGTGATTCCTACTATGTTTCTGTACTGGTTCTGTTTAAGTGAGTTCGATGTGAACCATGTCTGGAACATCTGAG
AACTTCCCAGCTATCAATCTTTAATTTTACATCTGAGAACTTCCCAGCTATCAATCTTTAATTTAGCTTGATAATTTTCATGCGTGAGATGGAATGGGC