« Back to Oryza meridionalis search


Detailed information on CNT30597252


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 4e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520889Oryza meridionalisSetaria italica60.6637.9682.61276forward
CNT30180392Oryza meridionalisSecale cereale62.8619.7184.62286forward
CNT30555688Oryza meridionalisOryza glaberrima82.8663.3698.94377forward
CNT30436135Oryza meridionalisAegilops tauschii62.8673.3385.31286forward
CNT30258429Oryza meridionalisAvena sativa64.456.3580.89293forward
CNT30648337Oryza meridionalisRosa chinensis31.4331.0985.31143forward
CNT30685518Oryza meridionalisTriticum urartu61.5462.9285.71280forward
CNT30371385Oryza meridionalisOryza glumipatula96.0468.1795.19437forward
CNT30104436Oryza meridionalisOryza rufipogon94.5178.7599.07430forward
CNT30578501Oryza meridionalisOryza barthii69.2328.0798.73315forward
CNT30118102Oryza meridionalisOryza nivara69.2327.7598.41315forward
CNT30604902Oryza meridionalisOryza punctata27.9139.0890.55127forward

Expression of CNT30597252

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGRAPTWNGAGTRSASGGPPR*

Sequence

>CNT30597252
GTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAGACATCATCGAATCAGAG
ATGAACAATTAAACAAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGATGAAACTGATGAGCTGCA
CCTGCCTGACATTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTTTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGTCGGTGCA
CCCGAACATGGGCAGGGCACCCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAGAGGGTCTCGA
ACTTCTTGATGCCCTCAATCGGCCACACCTGAATGAACAAACGATAATTGAATTG