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Detailed information on CNT30597241


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y205|RBS1_ORYSI, E-value = 3e-87

BLAST vs NONCODE:
NONORUT002193, E-value = 5e-134

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672821Oryza meridionalisSetaria viridis33.7538.7483.67294forward
CNT30521106Oryza meridionalisSetaria italica33.7540.5583.67294forward
CNT30180865Oryza meridionalisSecale cereale35.2543.4285.34307forward
CNT30287828Oryza meridionalisTriticum aestivum34.7929.4785.48303forward
CNT30221752Oryza meridionalisHordeum vulgare35.1345.7485.95306forward
CNT30386515Oryza meridionalisTriticum turgidum35.4822.3385.44309forward
CNT30555725Oryza meridionalisOryza glaberrima68.8980.5498.83600forward
CNT30436411Oryza meridionalisAegilops tauschii35.1346.4385.29306forward
CNT30248284Oryza meridionalisAvena sativa35.1340.7584.97306forward
CNT30658640Oryza meridionalisTriticum dicoccoides34.7957.9385.48303forward
CNT30136970Oryza meridionalisLolium perenne35.1347.8983.66306forward
CNT302730Oryza meridionalisZea mays28.9339.8783.33252forward
CNT30648517Oryza meridionalisRosa chinensis24.842.3586.57216forward
CNT30681645Oryza meridionalisTriticum urartu35.1320.9284.97306forward
CNT30720492Oryza meridionalisTriticum spelta28.2448.9186.18246forward
CNT30351770Oryza meridionalisEragrostis tef33.7530.1284.35294forward
CNT30150944Oryza meridionalisBrachypodium distachyon33.9844.3187.16296forward
CNT30104669Oryza meridionalisOryza rufipogon69.4672.9898.02605forward
CNT30578612Oryza meridionalisOryza barthii54.9942.3597.91479forward
CNT30118025Oryza meridionalisOryza nivara68.3151.4398.32595forward
CNT30556975Oryza meridionalisPanicum hallii34.5637.6783.06301forward
CNT30551876Oryza meridionalisOryza brachyantha34.3334.7793.98299forward

Expression of CNT30597241

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MVLTVDESDLAELEAGHPLGTEQVLDLLQEVLHGYYLHAPDPAAIADVAEAGVAGAAGDGHAGGGLEPLERSDGGGHLCSSPSSLLLCSSTS*

>peptide 2 (54 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGNFHMVQYLPS*

>peptide 3 (68 aa)
MHLILPPLLTLPKLELPERRATGMPAVDLSPWKGATVGAISAAHQALSFFARVLLEMHCSAHRLPRYV*

>peptide 4 (38 aa)
MPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

Sequence

>CNT30597241
CAAATTTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGATTCACATCCATCTCATACCCTTTGTATAAATATATATAGCCGGAGCTTTCA
TAGATTTCATTCACATATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGAGAGAGATCAGGTGAAACAAAAACAAA
AGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCC
TCGCAGCCCGGGGGCTTGTAGGCGATGAAACTGATGAGCTGCACCTGCCTGACATTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTTT
TGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGTCGGTGCACCCGAACATGGGCAACTTCCACATGGTCCAGTACCTGCCGTCGTAGTATCCGGGGGA
CCTATGGTTCTCACGGTAGACGAATCCGACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCC
ACGGTTATTACCTGCATGCACCTGATCCTGCCGCCATTGCTGACGTTGCCGAAGCTGGAGTTGCCGGAGCGGCGGGCGACGGGCATGCCGGCGGTGGACT
TGAGCCCCTGGAAAGGAGCGACGGTGGGGGCCATCTCTGCAGCTCACCAAGCTCTCTCCTTCTTTGCTCGAGTACTTCTTGAGATGCACTGCTCTGCACA
CAGGCTCCCGCGGTACGTATAAATAGCCAAAACCAGCGGTCACCTCCCCTAGCTTAGCTAATCGGATGGCA